|
Name : RPSI07_2516 (RPSI07_2516) Accession : YP_003753145.1 Strain : Ralstonia solanacearum PSI07 Genome accession: NC_014311 Putative virulence/resistance : Virulence Product : putative Capsule polysaccharide export protein kpsS Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3562 EC number : - Position : 2641186 - 2642463 bp Length : 1278 bp Strand : + Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 8326861, 8397187; Product type pt : putative transporter DNA sequence : ATGATCGAAGGCGGACCAGCCAGCCTCAAGGCGCAACGGGTGCTCCTGCTGCAAGGCCCCATGGGGCCGTTCTTTCGTCG CCTGGCGCGGGATCTCGAGGCCGTCGGCGCGCAGGTCCTGAAGGTCAATTTCAACGGGGGCGATTGGCTGTTCTACCCCA CGGGCGCGATCCACTATCGGGGAACGATGCCGAATTGGCCGGCGTTCTTCGAACGCCTGTTGCGCGACCACCGGATCGAT CTGGTGCTGCTGTTCGGCGATTGCCGGCCCGTCCATGAGGAGATCCAGCGGATCTGCCAGCGCTGCGGCGTCAAGACCGG CGTGTTCGAGGAAGGCTATGTGCGGCCGGACTACATCACGCTCGAACACTGCGGGGTGAATGGCTACTCGCAGACCCCAC GCTCACCGGCCGTCTACCGGCAGGCTCCCGAAGAGAACACCCCACCGCCGCATCCCGTCGGCAACACGTTCTGGCACGCC GTGCGCTGGGCGATTCTGTACTACGTGGCCGCTGCCCTGCTGTCACCGGTGTTCGCGCGCTACCGGCACCATCGCCCGCT CACGCTGCTGGAGGCCGGGCCGTGGCTGCGATCGGTCTGGCGCAAGCTCCACTACCGCATCCGCGAACGCGGCGTGCAAA GCGAACTGGCAGGCCCGCTGTCGGGGCGCTATTTCCTGCTCGCGCTGCAGGTCCACAACGACGCGCAGGTCCGCGTGCAT TCGGCGCACGAGACCGTGGCACAGTTCATTGATGAAACACTGCAGTCCTTCGCGCGCCGCGCGCCTGCCGACGCCATCCT CGTCATCAAGCATCACCCGCTGGACCGCGGCTACCACGACTACCGCCGACTGATTCGGCAGCGGGCCGAGGCGCTCGACC TGAGGCAACGTGTACGCTATCTCCACGACCAGCACCTGCCCACCCTGCTCACGCACGCACGCGGGATCGTGCTCATCAAC AGCACCGTCGGGCTTTCCGCCCTGGATCATGGCAAGCCGGTCAAGGCGTGTGGAACGGCGGTCTACAACCTGCCCGGCCT GACCTATCAAGGACCGCTGGACACCTTCTGGACCGCTGCGCCGGCGTTCGTGCCCGACCCGGCGCTGTTCCTCCGGTTTC GCACCTACCTGATCCGCCACACGCAGCTCAACGGCAATTTCTACAAGCGGCTGGACAGCGCAGGCAACCGTGTCGGCCTG ATCTGGAGCGAAGCCACCGGCGACGCGGTGCTGACCGGCTTCGGCTTGCCGGGCGGCTTTGTCAGCCGGCCTGAATGA Protein sequence : MIEGGPASLKAQRVLLLQGPMGPFFRRLARDLEAVGAQVLKVNFNGGDWLFYPTGAIHYRGTMPNWPAFFERLLRDHRID LVLLFGDCRPVHEEIQRICQRCGVKTGVFEEGYVRPDYITLEHCGVNGYSQTPRSPAVYRQAPEENTPPPHPVGNTFWHA VRWAILYYVAAALLSPVFARYRHHRPLTLLEAGPWLRSVWRKLHYRIRERGVQSELAGPLSGRYFLLALQVHNDAQVRVH SAHETVAQFIDETLQSFARRAPADAILVIKHHPLDRGYHDYRRLIRQRAEALDLRQRVRYLHDQHLPTLLTHARGIVLIN STVGLSALDHGKPVKACGTAVYNLPGLTYQGPLDTFWTAAPAFVPDPALFLRFRTYLIRHTQLNGNFYKRLDSAGNRVGL IWSEATGDAVLTGFGLPGGFVSRPE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsS | YP_854344.1 | polysialic acid capsule synthesis protein KpsS | Not tested | PAI I APEC-O1 | Protein | 1e-71 | 44 |
| kpsS | AAZ04471.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 9e-72 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RPSI07_2516 | YP_003753145.1 | putative Capsule polysaccharide export protein kpsS | VFG2551 | Protein | 2e-58 | 42 |
| RPSI07_2516 | YP_003753145.1 | putative Capsule polysaccharide export protein kpsS | VFG0705 | Protein | 2e-61 | 41 |
| RPSI07_2516 | YP_003753145.1 | putative Capsule polysaccharide export protein kpsS | VFG0693 | Protein | 2e-61 | 41 |
