Gene Information

Name : ctrD (RPSI07_2506)
Accession : YP_003753136.1
Strain : Ralstonia solanacearum PSI07
Genome accession: NC_014311
Putative virulence/resistance : Virulence
Product : Capsule polysaccharide export ATP-binding protein ctrD
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : 3.6.3.38
Position : 2625349 - 2626002 bp
Length : 654 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; Product type t : transporter

DNA sequence : 
ATGATCGAGCTCGACGAGGTCGCCAAGACTTACCACACCCGCCAGGGCCGGCGCACGGTGCTGGACGGCGTGAGCCTGCG
TGTCGGCAAAGGCGAGAAGATCGGCGTTCTCGGCCTGAACGGGGCGGGCAAGTCGACGCTCATCCGCCTGATCAGCGGCG
CCGAGCTGCCCTCGCGCGGCAGCATCCGGCGCAGCATGAGCGTGTCCTGGCCGCTCGCCTTCGGCGGCGCGTTTCAGGGC
AGCCTGACGGGGCTGGACAACCTGCGTTTCATCTGTCGGGTCTATGGCGCCGACATCGCGCGCGCCATTCCGTACGTGGA
GGCCTTCTCGGAACTGGGCCGCTATCTGCGCGAGCCCGTCAAGAAATATTCGTCGGGCATGCGGGCCCGGCTGGCCTTCG
CCATTTCCATGGCCATCGAATTCGACTGCTTCCTCATCGACGAGATCATCTCGGTGGGCGATGCGCGCTTTCATGCCAAG
TGCCAGCAGGAGCTCTTCGAGAAACGCAGGGACCGGGCGTTCATCATGGTCTCCCACGAGGCGCACAACATCCGCGAACA
TTGCGATCGCGCGGCGGTGCTCAGCGGTGGCCGGTTGCACGTGTTCGATGACGTCGATACGGCTTATACCTACTACCAGG
AGGCCGCCACATGA

Protein sequence : 
MIELDEVAKTYHTRQGRRTVLDGVSLRVGKGEKIGVLGLNGAGKSTLIRLISGAELPSRGSIRRSMSVSWPLAFGGAFQG
SLTGLDNLRFICRVYGADIARAIPYVEAFSELGRYLREPVKKYSSGMRARLAFAISMAIEFDCFLIDEIISVGDARFHAK
CQQELFEKRRDRAFIMVSHEAHNIREHCDRAAVLSGGRLHVFDDVDTAYTYYQEAAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 2e-69 64
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 5e-44 46
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 4e-46 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ctrD YP_003753136.1 Capsule polysaccharide export ATP-binding protein ctrD VFG2563 Protein 1e-69 65
ctrD YP_003753136.1 Capsule polysaccharide export ATP-binding protein ctrD VFG0258 Protein 7e-70 64
ctrD YP_003753136.1 Capsule polysaccharide export ATP-binding protein ctrD VFG0696 Protein 7e-68 62
ctrD YP_003753136.1 Capsule polysaccharide export ATP-binding protein ctrD VFG1449 Protein 2e-44 46