Gene Information

Name : ctrC (RPSI07_2505)
Accession : YP_003753135.1
Strain : Ralstonia solanacearum PSI07
Genome accession: NC_014311
Putative virulence/resistance : Virulence
Product : Capsule polysaccharide export inner-membrane protein ctrC
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1682
EC number : -
Position : 2624546 - 2625352 bp
Length : 807 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 2493648; Product type t : transporter

DNA sequence : 
ATGACTGAACTGGAGCACACCGGCCCCACGCCTTTGCGCCGCTCGCTGGCCGTCCATGCCCGGGTGGTAGGCGCGCTGCT
CAGGCGCGAAATTCTCACGCGCTATGGCCGCCACAACATCGGCTTCATGTGGCTGTTCGTCGAACCCATGCTGTTCACGC
TGGGCGTGACCACGCTGTGGACGTTCACCAAGGTGACGCACGGTTCCCGGCTGCCGATCGTCGCGTTCGCGGTCACGGGC
TATTCGTCGCTGCTGCTCTGGCGCAATACGGCCAGCCGGTGCGCCAAGGCCATCGAACCCAACCTGGCGCTGCTTTACCA
CCGCAATGTCCGCGTGATCGACCTCTTTGCCGCCCGGCTGATCCTGGAGATCGGCGGCGCCACGATTTCCTTCGTGGTCC
TCTTGCTGACCTTCATTGCGACGGGCTTGATGGACCTGCCGGCCGACGTGCTCACGATGGCGTATGCCTGGCTGCTGCTG
GCCTGGTTCGCTGCCTCGCTCGGGCTGGTGGTGGGCGCCCTGTCGGAGCGCTCGGAGGCTGTCGAACGTTTCTGGCATAC
GCTGGCCTACCTGCTGTTCCCGCTCTCGGGAGCGGTCTTCCTGGTGAACTGGCTGCCGCCCGTGGCCCGCGAGATCGTGC
TGTGGCTGCCGATGGTGCACGGTGTCGAAATGCTGCGGCATGGCTACTTCGGCGACCTCGTGCGCACCCACGCGGACCCG
GCCTACCTCGCGCTGGTCAATGCGTGCCTGATGCTCATCGGCCTGGCGCTCGTCCGGGAAACCGGCCGCCGCGTGGAACC
GGAATGA

Protein sequence : 
MTELEHTGPTPLRRSLAVHARVVGALLRREILTRYGRHNIGFMWLFVEPMLFTLGVTTLWTFTKVTHGSRLPIVAFAVTG
YSSLLLWRNTASRCAKAIEPNLALLYHRNVRVIDLFAARLILEIGGATISFVVLLLTFIATGLMDLPADVLTMAYAWLLL
AWFAASLGLVVGALSERSEAVERFWHTLAYLLFPLSGAVFLVNWLPPVAREIVLWLPMVHGVEMLRHGYFGDLVRTHADP
AYLALVNACLMLIGLALVRETGRRVEPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrC NP_273137.1 capsule polysaccharide export inner-membrane protein Not tested IHT-A Protein 6e-51 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ctrC YP_003753135.1 Capsule polysaccharide export inner-membrane protein ctrC VFG2564 Protein 2e-73 63
ctrC YP_003753135.1 Capsule polysaccharide export inner-membrane protein ctrC VFG0257 Protein 3e-51 51
ctrC YP_003753135.1 Capsule polysaccharide export inner-membrane protein ctrC VFG0697 Protein 8e-51 44
ctrC YP_003753135.1 Capsule polysaccharide export inner-membrane protein ctrC VFG0685 Protein 8e-51 44