Gene Information

Name : lolD (RPSI07_2258)
Accession : YP_003752897.1
Strain : Ralstonia solanacearum PSI07
Genome accession: NC_014311
Putative virulence/resistance : Resistance
Product : outer membrane lipoproteins ABC transporter, ATP_binding component
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : 3.6.3.28
Position : 2372395 - 2373129 bp
Length : 735 bp
Strand : -
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10783239, 11844772; Product type t : transporter

DNA sequence : 
ATGAGTGAGACCGTGATGACCGCCAACGAGGCCACCCACCGCAACGAGTGGGGCGACACCCCCGTGCTGCAGGCGCAGGG
ACTGGTCAAAGCGTTCAGGCAGGGCGGCTTGAATGTCGACGTGCTCAAGGGGGTCGACATCCGCATCGGCGTGGGCGAGA
AGGTCGCCATTGTGGGAGCGTCGGGCTCGGGCAAGAGCACGCTGCTGCATGTGCTGGGCGGGCTGGATGTGCCGACCTCG
GGCCGCGTGTCGCTGCTCGGCAAGCCGTTCACCGCCATGAGCGAGCGCGAGCGCAATACGCTGCGCAACCGGGCACTGGG
CTTCGTCTACCAGTTCCACCACCTGCTGCCGGAATTCACCGCGCTCGACAACGTTGCCATGCCGCTGCGCATCCGCGGCG
AGAACGAAGCGCAGGCGCGCCATACCGCGCAGGCCATGCTGGCGCGCGTGGGCCTGGGTGAGCGCACGGCACACCGGCCG
GGCGAGCTGTCCGGCGGCGAACGCCAGCGGGTGGCGATCGCGCGCGCGCTGGTGGGCTCGCCTGCCTGCGTGCTGGCCGA
CGAGCCCACCGGCAACCTCGACGACCACACCGCCGGCGAAGTGTTCGACCTGATGCTGGAGCTGACGCGCACGCTCGGCA
CCAGCTTCGTCATCGTCACGCACGACATCGACCTGGCCGGCCGCTGCGACCGTATCCTGCGCCTGCGCGACGGGCATCTG
CACCAGGAACGGTAA

Protein sequence : 
MSETVMTANEATHRNEWGDTPVLQAQGLVKAFRQGGLNVDVLKGVDIRIGVGEKVAIVGASGSGKSTLLHVLGGLDVPTS
GRVSLLGKPFTAMSERERNTLRNRALGFVYQFHHLLPEFTALDNVAMPLRIRGENEAQARHTAQAMLARVGLGERTAHRP
GELSGGERQRVAIARALVGSPACVLADEPTGNLDDHTAGEVFDLMLELTRTLGTSFVIVTHDIDLAGRCDRILRLRDGHL
HQER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-33 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-33 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-33 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_003752897.1 outer membrane lipoproteins ABC transporter, ATP_binding component NC_008702.1.4606598. Protein 9e-33 47
lolD YP_003752897.1 outer membrane lipoproteins ABC transporter, ATP_binding component NC_012469.1.7686878. Protein 4e-40 43