Gene Information

Name : dnaB (RPSI07_2056)
Accession : YP_003752696.1
Strain : Ralstonia solanacearum PSI07
Genome accession: NC_014311
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 2147366 - 2148784 bp
Length : 1419 bp
Strand : -
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10404597, 6323420; Product type e : enzyme

DNA sequence :
ATGAATGCGCCGCGCCGCTATAATCCCGCCATGAACGCGCCCACCGATCCCCAGCTCGAATCCCTCAAGGTTCCGCCGCA
TTCCATCGAGGCCGAACAGTCGGTGCTCGGCGGCTTGCTGCTGGATAACGCCGCGTGGGACCGCATTGCCGACTTCATCA
ACGAGCACGATTTCTACCGCTACGACCACCGGCTGATCTTCCACAACATCGGCAAGCTGATCTCGCAGGCCAAGCCGGCC
GACGTGATCACGGTGTACGAAATGCTGCAGGCATCGGGCAAGTCGGAAGAGGTGGGGGGGCTGGCCTACCTGAACGCACT
GGCGCAGAACACGCCGAGCGCGGCCAACATCCGCCGCTATGCCGAGATCGTCCGTGACCGCGGCGTGCTGCGCCAGCTGG
TGACGATTGCCGACGAGATTTCCGCCGGCGCCTTCAACCCGCAGGGCCGCGATGTACGCCAACTGCTGGACGAGGCCGAG
TCGAAGGTGTTCGCGATCGCCGAAGAGGGGGCGCGGGGGCAGAAGGGCTTCTTGGAAATCCAGCCGCTGCTGACGCAGGT
GGTCGAGCGCATCGACGAGCTGTACCACCGCGATAGCCAGAGCGACATCACCGGTATACCGACGGGTTTCGTTGACCTCG
ACCGCATGACCAGCGGTATGCAGGGAGGTGACCTGATCATCGTGGCCGGCCGCCCCTCGATGGGTAAGACCGCGTTCTCG
CTGAACATCGGCGAGCACGTGGCCGTGGAGCAGGGCTTGCCGGTGGCGGTGTTCTCGATGGAAATGGCGGGCACGCAGCT
CGCCATGCGTATGCTCGGTTCGGTCGGCCGGCTGGACCAGCACCGCCTGCGCACGGGCCGCCTGCTCGACGAGGACTGGC
CGCGCCTGACGCATGCCATCCAGAAGATGAACGACGCGCAGCTGTTCATCGACGAGACGCCGGCGCTGAACCCGATGGAA
CTGCGCGCGCGCTCGCGCCGGCTGGCCCGGCAGTGCGGGCAGCTTGGCCTGATCATCATCGACTACCTGCAGCTGATGTC
GGGCTCGGGAGGCGGCGAGAACCGCGCGACCGAGATCTCGGAAATCTCCCGCTCGCTCAAGGGGCTGGCCAAGGAACTCA
ACTGTCCGGTGATTGCGCTGTCGCAGCTGAACCGGAGCCTGGAACAGCGCCCGAACAAGCGTCCCGTGATGTCGGACTTG
CGCGAATCCGGTGCTATCGAACAGGATGCCGACGTGATCCTGTTCATCTATCGCGACCAGGTCTACAACCCCGACTCTCC
CGACAAGGGCACCGCCGAAATCATCATCGGCAAGCAGCGTAACGGTCCGATCGGCACCGTCCGGCTGACGTTCCTGGGCG
AATACACGAAGTTCGACAACTTCACCGGCGGCAACGCCTTCTTCGACAACGACACCTGA

Protein sequence :
MNAPRRYNPAMNAPTDPQLESLKVPPHSIEAEQSVLGGLLLDNAAWDRIADFINEHDFYRYDHRLIFHNIGKLISQAKPA
DVITVYEMLQASGKSEEVGGLAYLNALAQNTPSAANIRRYAEIVRDRGVLRQLVTIADEISAGAFNPQGRDVRQLLDEAE
SKVFAIAEEGARGQKGFLEIQPLLTQVVERIDELYHRDSQSDITGIPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKTAFS
LNIGEHVAVEQGLPVAVFSMEMAGTQLAMRMLGSVGRLDQHRLRTGRLLDEDWPRLTHAIQKMNDAQLFIDETPALNPME
LRARSRRLARQCGQLGLIIIDYLQLMSGSGGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDL
RESGAIEQDADVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFLGEYTKFDNFTGGNAFFDNDT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 9e-109 54
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 1e-94 50
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 1e-94 50
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 9e-90 48
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 3e-91 47
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 5e-89 47
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 5e-89 47
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 5e-92 46
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 2e-75 45