Gene Information

Name : RPSI07_1615 (RPSI07_1615)
Accession : YP_003752262.1
Strain : Ralstonia solanacearum PSI07
Genome accession: NC_014311
Putative virulence/resistance : Unknown
Product : putative transposase, integrase domain
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1642123 - 1642863 bp
Length : 741 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : putative enzyme

DNA sequence :
ATGGCACTGCGCAGCCGAGTGCACGAGCTGTTTGTAGAGAGCCGGAGCTCGGCTGGCAGCCGCAGCATCATGGGCATGAT
GCGCGAACAAGGCACGGTGATTGGCCGCTTCAAGGTCAGTCGTTTGATGGAGGAGCTGGGCCTGATCTGCAAGCAGCCCG
GCAGCCACGCCTACAAGCAGGCCACGGTGGAGCGGATCGACATCCCGAACCGGCTCAATCGTCAGTTTGCGGTCGATGCA
CCGAATCAGGTCTGGTGTGGTGACATCACCTACGTCTGGGCTCAAGGCTGCTGGCATTACCTGGCGGCAGTGCTCGATCT
GTTCACGCGACGGGTCGTCGGCTGGGCATTCTCGACACGCCCCGATGCCGATCTGGTCGTGCAAGCATTGGACATGGCCT
ATGAGCAGCGTGGTAGACCGCAGGGGCTGCTGTTCCACTCGGACCAAGGTGGCCAGTATGCAAGTCGGAAATTCCGGCAA
CGCCTGTGGCGCTACCGGATACAACAGAGCATGAGCCGCCGTGCCAACTGCTGGGACAACTCCCCGATGGAGAGGCTGTT
CCGCAGCCTGAAGACCGAGTGGTTGCCGTCAGGGGGTTACATGACGGCGCATGAAGCACACCGGGACATCAGCCATTACC
TGATGCACCGGTACAACTGGATACGGCCACATCAGTTCAATGACGGACTGGCGCCGGCTGTTGCAGAGGAAAAACTTAAC
GCAGTGTCCGGGATGGGTTGA

Protein sequence :
MALRSRVHELFVESRSSAGSRSIMGMMREQGTVIGRFKVSRLMEELGLICKQPGSHAYKQATVERIDIPNRLNRQFAVDA
PNQVWCGDITYVWAQGCWHYLAAVLDLFTRRVVGWAFSTRPDADLVVQALDMAYEQRGRPQGLLFHSDQGGQYASRKFRQ
RLWRYRIQQSMSRRANCWDNSPMERLFRSLKTEWLPSGGYMTAHEAHRDISHYLMHRYNWIRPHQFNDGLAPAVAEEKLN
AVSGMG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 2e-95 80
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 4e-59 57
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 4e-59 57
unnamed AAC31485.1 L0006 Not tested LEE Protein 2e-59 56
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 3e-59 56
unnamed CAI43898.1 putative transposase Not tested LEE Protein 4e-61 54
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 4e-61 54
Z5089 NP_290241.1 transposase Not tested LEE Protein 5e-61 54
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 3e-61 54
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 5e-64 54
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-65 53
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-65 53
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-65 53
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-65 53
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 7e-65 53
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 5e-65 53
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 7e-65 53
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-65 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPSI07_1615 YP_003752262.1 putative transposase, integrase domain VFG1484 Protein 2e-59 57
RPSI07_1615 YP_003752262.1 putative transposase, integrase domain VFG0785 Protein 2e-61 54
RPSI07_1615 YP_003752262.1 putative transposase, integrase domain VFG1122 Protein 3e-65 53