Gene Information

Name : hrcR (RPSI07_mp0806)
Accession : YP_003749779.1
Strain :
Genome accession: NC_014310
Putative virulence/resistance : Virulence
Product : Hypersensitivity response secretion protein hrcR, type III secretion system
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 986359 - 987012 bp
Length : 654 bp
Strand : -
Note : Evidence 2b : Function of strongly homologous gene; Product type t : transporter

DNA sequence : 
ATGCAGAACGTTGAGTTCGCCTCCCTGATCGTGATGGCGGTGGCGATCGCGCTGCTGCCGTTCGCCGCCATGGTCGTCAC
CTCGTACACCAAGATCGTCGTGGTGCTCGGCCTGCTGCGCAATGCGCTCGGGGTCCAGCAGGTGCCGCCCAACATGGTCC
TCAACGGCATCGCGATGATCGTCTCGTGCTTCATCATGGCGCCGGTCGGCATGGAGGCCATGCAGCGCGCGCATGTGCAG
ATCAACGCGCAGGGCGGCACCAATATCACCCAGGTCATGCCGCTGCTGGACGCGGCCCGCGATCCGTTCCGCGAATTCCT
CAACAAGCACACCAATGCGCGCGAGAAGGCGTTTTTCATGCGCTCCGCGCAGCAGCTGTGGCCGCCGGCCAAGGCCGCGC
TGCTCAAGGACGACGACCTGATCGTGCTCGCGCCGGCCTTCACGCTCACCGAGCTGACCTCGGCCTTCCGCATCGGCTTC
CTGCTCTACCTCGCCTTCATCGTGATCGACCTGGTGATCGCCAACCTGCTGATGGCGCTCGGGCTGTCGCAGGTGACGCC
GTCGAACGTGGCCATCCCGTTCAAGCTGCTGCTGTTCGTGGTAATGGACGGCTGGTCGGTGCTCGTCCACGGCCTGGTCA
ACACCTATCGCTGA

Protein sequence : 
MQNVEFASLIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAPVGMEAMQRAHVQ
INAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAALLKDDDLIVLAPAFTLTELTSAFRIGF
LLYLAFIVIDLVIANLLMALGLSQVTPSNVAIPFKLLLFVVMDGWSVLVHGLVNTYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-72 77
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-72 75
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-74 73
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-74 73
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-74 73
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-72 72
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-72 72
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 7e-74 72
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-45 48
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 6e-33 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-33 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-32 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-32 42
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-39 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-38 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 4e-39 42
escR AAC38369.1 EscR Virulence LEE Protein 2e-38 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 4e-39 42
escR AAC31528.1 L0049 Virulence LEE Protein 3e-39 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-39 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-39 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-39 42
escR AAK26700.1 EscR Virulence LEE Protein 2e-39 42
escR AAL57527.1 EscR Virulence LEE Protein 2e-39 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-39 42
unnamed AAL06354.1 EscR Virulence LEE Protein 4e-37 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-31 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-31 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-40 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcR YP_003749779.1 Hypersensitivity response secretion protein hrcR, type III secretion system VFG0394 Protein 1e-46 52
hrcR YP_003749779.1 Hypersensitivity response secretion protein hrcR, type III secretion system VFG0188 Protein 3e-49 50
hrcR YP_003749779.1 Hypersensitivity response secretion protein hrcR, type III secretion system VFG0044 Protein 2e-45 43
hrcR YP_003749779.1 Hypersensitivity response secretion protein hrcR, type III secretion system VFG0715 Protein 1e-38 42
hrcR YP_003749779.1 Hypersensitivity response secretion protein hrcR, type III secretion system VFG0827 Protein 1e-39 42
hrcR YP_003749779.1 Hypersensitivity response secretion protein hrcR, type III secretion system VFG1012 Protein 2e-36 41