|
Name : pilB (RCFBP_10635) Accession : YP_003744583.1 Strain : Ralstonia solanacearum CFBP2957 Genome accession: NC_014307 Putative virulence/resistance : Virulence Product : type IV pilus assembly protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 663591 - 665318 bp Length : 1728 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1971619, 8100347; Product type s : structure DNA sequence : ATGACTCTCGGACTCGCACTTACGCAGAGCCGGCGAATTGCGCCGACATTACTCACTCAGCTAGAGCAGAGCGCGCGCGA AAAGCGCACGCAGTTGATCGACGAACTGGTGAGCAGCGGCATCATGAGCGCGCACGACCTCGCCGTCTTCGTGGCGGGCA AGTACCAGATGCCGCTGCTGGACCTGGCGCAGTACAAGCTCGACACCGTGCCGGCCGTGCTGTCGGCCAACAAGCATTTC CAGCAGTTGCGCCTGCTGCCGCTGGGCCGGCGCGACAACCGCATCATCGTCGCCACCTCGGACCCGAGCGACCCGAAGCC GATCGAAGAACTGCGCCAGAAGATGAACGTGGCGATCGAGACGGTCATCGTCGAGCACGACAAGCTGATGCGCCAGTTGA GCGTCGCCAACGAAGCGCCGGCCGAGATCAAGTCGCTCATCCCCAAGCAGGAAACCACCCAGATCGAATACGACCCGGGC GCGGCCGCAGCGGTGCGGCGTACCCCGACCGACGGCATCGACGATGCACCGGTGGTGCGCTTCCTGCAGAAGCTGTTCAC CGAGGCGCTGCTGCGCGGCACGTCCGACTTGCACTTCGAGCCGTTTGAAACGTTTTACCGCGTGCGCTTCCGCATCGACG GCATCCTTGAACAAGTCGCTCAGCCGCCGCTGGACATCCGCGACAAGATCGCTACCCGTATCAAGGTGTTGTCGCGCCTG GACATCTCGGAAAAACGCGTGCCGCAGGACGGCCGCATGAAGCTGCTGATCACCGTTCCGAAGGACAAGAACGACAAGGA CAACAAGGAGACGGTCGAGCGCGCTATCGACTTCCGGGTATCGACGCTGCCGACGCTGTTCGGCGAGAAGATCGTGATCC GGATTCTGGAGTCCTCGACCGAGCGGCTCGATATCGACCAGCTCGGCTATGAGCCCGAGCAGAAGCAGCTCCTGCTGGAC GTGATCAAACGCCCCTACGGCATGGTGCTGGTGACCGGCCCGACCGGTAGCGGCAAGACGGTGTCGCTGTACACCTTCCT GAACAGGCTGAACCAGGGCGACATCAACATTTCCACGGCGGAAGATCCGGCGGAAATCCAGCTGCCCGGCATCAACCAGG TCAACGTCAACGACAAGGCGGGGCTGACCTTCGCCGCGGCGCTGAAATCGTTCCTGCGTCAGGATCCCGACATCATCATG GTGGGCGAAATCCGGGACCTGGAAACCGCCGATATCTCCATCAAGGCCGCACAGACCGGCCACTTGGTGTTCTCCACGCT GCACACCAACGACGCGCCGACCACGCTCACACGCCTGATGAACATGGGCGTGGCGCCGTTCAACATCGCCTCGTCGGTGC TGATGATCACGGCGCAGCGTCTGGGGCGGCGCCTGTGCAAGGCCTGCAAGAAGCCGGGCCCGCTGCCCAAGGAAACGCTA CTGGACGCGGGCTTCAAGGAAGCAGACCTGGACGGCTCGTGGCAGCCGTACCATCCGGTCGGCTGCGAGGCATGCAACGG CAGCGGCTACAAGGGCCGGGTCGGCATCTACCAGGTCATGCCGATCACCGAGGCGATCCAGGAGATCATCCTCACCCACG GCACCGCGCTGCAGATCGCCGAACAGGCGCGCAAGGAGGGCGTGCTCTCGCTGCGCGACTCCGGCCTGAGAAAAGTGAAG CAGGGGCTGACTTCCCTTGAGGAAGTGCTGGCCACGACGAACCAATAA Protein sequence : MTLGLALTQSRRIAPTLLTQLEQSAREKRTQLIDELVSSGIMSAHDLAVFVAGKYQMPLLDLAQYKLDTVPAVLSANKHF QQLRLLPLGRRDNRIIVATSDPSDPKPIEELRQKMNVAIETVIVEHDKLMRQLSVANEAPAEIKSLIPKQETTQIEYDPG AAAAVRRTPTDGIDDAPVVRFLQKLFTEALLRGTSDLHFEPFETFYRVRFRIDGILEQVAQPPLDIRDKIATRIKVLSRL DISEKRVPQDGRMKLLITVPKDKNDKDNKETVERAIDFRVSTLPTLFGEKIVIRILESSTERLDIDQLGYEPEQKQLLLD VIKRPYGMVLVTGPTGSGKTVSLYTFLNRLNQGDINISTAEDPAEIQLPGINQVNVNDKAGLTFAAALKSFLRQDPDIIM VGEIRDLETADISIKAAQTGHLVFSTLHTNDAPTTLTRLMNMGVAPFNIASSVLMITAQRLGRRLCKACKKPGPLPKETL LDAGFKEADLDGSWQPYHPVGCEACNGSGYKGRVGIYQVMPITEAIQEIILTHGTALQIAEQARKEGVLSLRDSGLRKVK QGLTSLEEVLATTNQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-77 | 43 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-78 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | YP_003744583.1 | type IV pilus assembly protein | VFG0233 | Protein | 2e-132 | 53 |
| pilB | YP_003744583.1 | type IV pilus assembly protein | VFG2426 | Protein | 8e-107 | 52 |
| pilB | YP_003744583.1 | type IV pilus assembly protein | VFG0112 | Protein | 3e-129 | 52 |
| pilB | YP_003744583.1 | type IV pilus assembly protein | VFG1880 | Protein | 2e-120 | 48 |
| pilB | YP_003744583.1 | type IV pilus assembly protein | VFG1876 | Protein | 3e-78 | 45 |
| pilB | YP_003744583.1 | type IV pilus assembly protein | VFG2048 | Protein | 3e-77 | 43 |
