Gene Information

Name : insC (RCFBP_20550)
Accession : YP_003746333.1
Strain : Ralstonia solanacearum CFBP2957
Genome accession: NC_014307
Putative virulence/resistance : Unknown
Product : transposase; is2 insertion element repressor
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 2507519 - 2507908 bp
Length : 390 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; Product type e : enzyme

DNA sequence :
ATGACTAGCAGCAAACAAGAAGTGATGGAAGTGCTGACGGGGCCGGAGCGCCGCCGGCGGTGGTCGGTGGAAGAGAAGCT
TGCGATGGTCAGGGAGAGCTTCGAGCCGGGCAAGACGGTCTCGATGGTGGCGCGCCAGCACGGTGTGAACCCGAATCAGG
TGTTCCAGTGGCGCAAGCTGTACCAGGACGGCCGCCTGTCGGCGGTGAGTGCGGGCGAGGAAGTGGTGCCGGCCTCCGAG
TTGGCCGAAGCGCTCAAGCAAATCCGAGAACTGCAGCGCATGCTCGGCAAGAAGACGATGGAGAACGAGATTCTGCGCGA
AGCTGTGGAATACGGCCGGGCAAAAAAGCGGATAGCGCGCTCGCCATCGTTGCCAGGGGACGACCAGTGA

Protein sequence :
MTSSKQEVMEVLTGPERRRRWSVEEKLAMVRESFEPGKTVSMVARQHGVNPNQVFQWRKLYQDGRLSAVSAGEEVVPASE
LAEALKQIRELQRMLGKKTMENEILREAVEYGRAKKRIARSPSLPGDDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S3188 NP_838471.2 insertion sequence 2 OrfA protein Not tested SHI-1 Protein 1e-38 69
S4060 NP_839229.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 1e-38 69
S4049 NP_839217.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 4e-38 69
tnpG AAD44740.1 TnpG Not tested SHI-2 Protein 8e-39 69
unnamed AAL57520.1 IS2 transposase Not tested LEE Protein 8e-39 69
st02 CAC81840.1 ST02 protein Not tested LEE II Protein 8e-39 69
ECO26_5247 YP_003232129.1 insertion sequence 2 OrfA protein Not tested LEE Protein 1e-38 69
SF2984 NP_708758.3 IS2 ORF1 Not tested SHI-1 Protein 8e-39 69
aec50 AAW51733.1 Aec50 Not tested AGI-3 Protein 3e-39 68
SF3709 NP_709448.3 IS2 ORF1 Not tested SHI-2 Protein 2e-38 68
SF3722 NP_709461.3 IS2 ORF1 Not tested SHI-2 Protein 2e-38 68
insC YP_002414034.1 IS2 insertion element repressor InsA; KpLE2 phage-like element Not tested Not named Protein 2e-27 67
insC YP_854262.1 IS2 transposase Not tested PAI I APEC-O1 Protein 1e-26 64
c5196 NP_757044.1 transposase insC Not tested PAI II CFT073 Protein 1e-26 64
insC AAZ04431.1 IS2 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 1e-26 64
unnamed AAL67376.1 insertion sequence protein Not tested PAI II CFT073 Protein 4e-27 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
insC YP_003746333.1 transposase; is2 insertion element repressor VFG0648 Protein 2e-39 69
insC YP_003746333.1 transposase; is2 insertion element repressor VFG0622 Protein 6e-39 68
insC YP_003746333.1 transposase; is2 insertion element repressor VFG0609 Protein 6e-39 68
insC YP_003746333.1 transposase; is2 insertion element repressor VFG1733 Protein 7e-28 67