|
Name : lysS (RCFBP_20452) Accession : YP_003746246.1 Strain : Ralstonia solanacearum CFBP2957 Genome accession: NC_014307 Putative virulence/resistance : Virulence Product : lysine tRNA synthetase, constitutive Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2415696 - 2417228 bp Length : 1533 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2183178; Product type e : enzyme DNA sequence : ATGACCGAACCGAACACTCCGGCCACAGCCACTGGACAGGCGCAGGACGACAACCAGATCATGGCCGAGCGCCGCGAGAA GCTCGCCGCGCTGCGCCAGCAGGGCGTCGCCTACCCCAACGATTTCCGCCCCGCGCACCACGCCGCGGACCTGCACACCC GCTACAGCGAGACGGACCAGCCCGCGCTGGAAGCGGCCAATGTCGAGGTTGCCATCGCCGGGCGCATGATGCTCAAGCGC GTGATGGGCAAAGCCAGCTTCGCCACCGTGCAGGACGGCAGCGGCCAGATCCAGTTCTACATCACGCGCGACCGCGTGGG TGAAGAGGTCTATGCCGCGTTCAAGCACTGGGATCTGGGCGACATCATCGCCGCGCGCGGCGTGCTGTTCCGCACCAACA AGGGCGAACTGTCGGTGCAGGTGCAGGAGCTGCGCCTGCTGTCGAAGTCGCTGCGTCCGCTGCCGGACAAGTTCCACGGC CTGGCCGACCAGGAAATGAAGTACCGCCAGCGCTACGTGGACCTGATCGTCTCGCCCGAGACGCGCAACACCTTCCGCGC CCGCACCAAGGCCATCGCCTCGCTGCGCCGCCACATGGGCGACGCCGGCTTCATGGAAGTCGAGACGCCGATGCTGCACC CGATTCCGGGCGGCGCCGCGGCCAAGCCGTTCATCACGCACCACAACGCGCTGGACATGCAGATGTTCCTGCGCATCGCG CCGGAGCTGTACCTCAAGCGCCTGATCGTCGGCGGCTTCGAGCGCGTGTACGAGATCAACCGCAACTTCCGCAACGAGGG CGTGTCGCCGCGGCACAACCCCGAGTTCACGATGATGGAGTTCTACGCAGCCTACACGGACTACCGCTGGCTGATGGACT ACACCGAGAACCTGATCCGCCGGGCCGCCATCGACGCCACCGGCAGCGCCGTGCTCAATTACCAGGGCCGCGAGCTGGAC CTGTCCAAGCCGTTCCACCGCCTGACCATCGCCCAGGCCATCCAGAAGTACGCACCGCAGTACACCGACGCGCAACTGGC CGACGCCGACTTCCTGCGCACCGAACTCAAGACGTTCAAGATCGATACCAATGCGCCGCAGTTCCTGAACGCGGGCGTCG GCACGCTGCAACTGGTGCTGTTCGAAGAGACGGCAGAATCGCAACTGTGGGAGCCGACCTTCATCATCGACTACCCGGTC GAAGTGTCGCCGCTGGCCCGTGCGTCGGATACGCGCGCCAGCATCACCGAGCGCTTCGAGCTGTTCATCACCGGCCGCGA GATCGCCAACGGCTTCTCCGAGCTCAACGATCCGGAAGACCAGGCCGAACGCTTCCGCAAGCAGGTCGAACAGAAAGACG CCGGCGACGAGGAAGCCATGTACTACGACGCCGATTACATCCGTGCGCTCGAATACGGCATGCCCCCGACCGGCGGCTGC GGCATCGGCATCGACCGCCTGGTGATGCTGCTGACCGACAGCCCCAACATCCGCGACGTGATTCTCTTCCCGCACCTGCG CCGCGAAGACTGA Protein sequence : MTEPNTPATATGQAQDDNQIMAERREKLAALRQQGVAYPNDFRPAHHAADLHTRYSETDQPALEAANVEVAIAGRMMLKR VMGKASFATVQDGSGQIQFYITRDRVGEEVYAAFKHWDLGDIIAARGVLFRTNKGELSVQVQELRLLSKSLRPLPDKFHG LADQEMKYRQRYVDLIVSPETRNTFRARTKAIASLRRHMGDAGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFLRIA PELYLKRLIVGGFERVYEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDYTENLIRRAAIDATGSAVLNYQGRELD LSKPFHRLTIAQAIQKYAPQYTDAQLADADFLRTELKTFKIDTNAPQFLNAGVGTLQLVLFEETAESQLWEPTFIIDYPV EVSPLARASDTRASITERFELFITGREIANGFSELNDPEDQAERFRKQVEQKDAGDEEAMYYDADYIRALEYGMPPTGGC GIGIDRLVMLLTDSPNIRDVILFPHLRRED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-128 | 54 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 3e-80 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003746246.1 | lysine tRNA synthetase, constitutive | VFG1668 | Protein | 1e-128 | 54 |
