Gene Information

Name : lolD (RCFBP_20316)
Accession : YP_003746115.1
Strain : Ralstonia solanacearum CFBP2957
Genome accession: NC_014307
Putative virulence/resistance : Resistance
Product : outer membrane lipoproteins ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : 3.6.3.28
Position : 2302659 - 2303402 bp
Length : 744 bp
Strand : -
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10783239, 11844772; Product type t : transporter

DNA sequence : 
ATGAGTGAGACCGTGATGACGGCCGGCGAGGCCACGCACAGCGCCAACTGGGGCGATGCGCCGGTGCTGCAGGCGCAGGG
GCTGGTCAAGGCGTTCAGGCAGGGCGGGCTGAATGTCGATGTGCTCAAGGGGGTCGACATCCGCATCGGCGTGGGCGAGA
AGGTGGCCATCGTCGGTGCGTCGGGCTCGGGCAAGAGCACGCTGCTGCATGTGCTGGGCGGGCTGGACGAGCCCACTTCC
GGCAGTGTGTCGCTGCTCGGCAAGCCGTTCACCTCCATGCGTGAGCGCGAGCGCAATACGCTGCGCAACCGCGCGCTGGG
CTTCGTCTATCAGTTCCACCACTTGCTGCCGGAGTTCACCGCGCTCGACAACGTCGCCATGCCGTTGCGCATCCGCGGCG
AGAACGAAGCGCAGGCGCGCCATACCGCGCAGGCCATGCTGGCGCGCGTGGGTCTGGGCCAGCGCACGGCACACCGGCCG
GGCGAGCTGTCCGGCGGCGAGCGCCAGCGGGTGGCGATCGCGCGCGCGCTGGTGGGGTCGCCCGCCTGTGTGTTTGCCGA
CGAGCCCACCGGCAATCTCGACGACCACACTGCCGGCGAAGTCTTCGACCTGATGCTGGAACTGGCGCGCACGCTCGGCA
CCAGCTTTGTCATCGTCACGCACGACATCGACCTCGCCGCGCGCTGCGACCGCGTGCTGCGCCTGCGTGACGGCCATCTG
CACCTGGAGCGGCCGACCGCGTAA

Protein sequence : 
MSETVMTAGEATHSANWGDAPVLQAQGLVKAFRQGGLNVDVLKGVDIRIGVGEKVAIVGASGSGKSTLLHVLGGLDEPTS
GSVSLLGKPFTSMRERERNTLRNRALGFVYQFHHLLPEFTALDNVAMPLRIRGENEAQARHTAQAMLARVGLGQRTAHRP
GELSGGERQRVAIARALVGSPACVFADEPTGNLDDHTAGEVFDLMLELARTLGTSFVIVTHDIDLAARCDRVLRLRDGHL
HLERPTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 47
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 47
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-34 47
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_003746115.1 outer membrane lipoproteins ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 4e-31 45
lolD YP_003746115.1 outer membrane lipoproteins ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 5e-39 42