Gene Information

Name : RCFBP_20257 (RCFBP_20257)
Accession : YP_003746056.1
Strain : Ralstonia solanacearum CFBP2957
Genome accession: NC_014307
Putative virulence/resistance : Unknown
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG4172
EC number : -
Position : 2240454 - 2242109 bp
Length : 1656 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt : transporter

DNA sequence :
ATGACCCGCGTCGATCTGCGCTCGGCCAAGCCCGGCTACGACGGCCCGCTGCTGCGGCTGGAAGACCTGTCCGTGCGCTT
CGAGGCCGACCACGGCGAGTGGACCGAGGTCGTCAGGCAGGTCTCGTTCGACCTGCACGCCGGCGAGCGCTTTGCGCTGG
TGGGCGAATCGGGTTCCGGCAAGACGGTCACCGCGCTGTCGATCATGCGCCTGCTGGCCGATGCGCACTACAGCGGCCGC
ATCCTGTTCGAAGGGCGCGACCTGCTGGCCGCGAGCGAGCGCCAGATGCGCGGGCTGCGCGGCGCCGACGTCGCGATGGT
GTTCCAGGAGCCGATGACGGCGCTCAACCCGCTGTACACCGTCGGCAACCAGATCGTCGAGACGCTGGAGCTGCACGAAG
GCCTGGACAAGCGTGCCGCCAAAGCCCGCGCGATCGCGCTGCTGGAGCACACCGGCATCGCCGAGGCAGCGCGCCGCTTC
GATGCCTTCCCGCATCAGTTGTCCGGCGGCCAGCGGCAGCGCGCCATGATTGCCATGGCACTCGCCTGCAGCCCCAAGCT
GCTGCTCGCCGACGAGCCCACCACCGCGCTCGACGTGACCGTGCGCATGCAGATCCTGCAACTGCTGCGCGACCTGCAGG
CCGAGTACGGCATGGCCGTGATGCTGATCACGCACGACCTGAACATGGTGCGCGCCTTTGCCGAGCGCGTGGGAGTGATG
GAGCGGGGCGTGCTGGTGGAGACCGGCGACACCGCGGCCATCTTCAACGCGCCGCAGCATCCCTACACGGTGCGCCTGCT
GGAAAGCCGTCCGCAGCGCGATGTGCTGCCGCTGGTGCCGCTGGCTCCCGTGCTGCTCGAGGCCGACCGTCTGAGCGTGA
CCTACGACCGGCATCGCCCCGGGTTTGCGGGCTGGTTCCGCTCCGATCCGTTCACGGCGGTCGACCAGGTCTCGCTGCAG
TTGCGCGAGGGCGAGACGCTGGGCATCGTCGGGGAGTCCGGTTCGGGCAAGACCACGCTGGTGCAGACGCTGCTCGGGCT
GCAGCGTCCGCAGGCGGGCGATTTGCGCTTCCTCGGCAGTTCGCTGCTGCGCCAGACGCGCGACGAGCGCCGCGCAGTGC
GCGCCCGCATGCAGGTGGTGTTCCAGGACCCGTTCGGCTCGCTGTCGCCGCGCATGACCATCGAGCAGATCGTCGAAGAG
GGGTTGGCGCTGCACCAGCCGCACATCAACGTCACGGAGCGTCGCCATCGCGTGACCGAGGCGCTGCGCGATGTCGGCCT
GGACCGCACCGCCCTGGGGCGTTATCCGCATGAGTTCTCCGGCGGGCAGCGCCAGCGCATCGCCATTGCGCGGGTGCTGA
TCCTCAAGCCCCAGGTCCTGGTGCTGGATGAACCGACTTCGGCACTCGATGTGTCCATCCAGCAGCAGGTGCTGTCGCTG
CTGTCTGCCCTCCAGAAGAAGTACAACCTGTCGTACCTGTTCATCAGCCACGATCTCGCCGTCATCCGTGCGATGTCGCA
CCGCGTGATGGTGATGAAGGACGGGAAGGTGGTGGAGGAGGGTGATACGGAGGCCGTGCTGGCGTCGCCTTCGCACGCCT
ATACCCGCAAGCTGATGGCGGCTGCGGCCTTGCCGCCACTTCAGCCGCCGGGCTGA

Protein sequence :
MTRVDLRSAKPGYDGPLLRLEDLSVRFEADHGEWTEVVRQVSFDLHAGERFALVGESGSGKTVTALSIMRLLADAHYSGR
ILFEGRDLLAASERQMRGLRGADVAMVFQEPMTALNPLYTVGNQIVETLELHEGLDKRAAKARAIALLEHTGIAEAARRF
DAFPHQLSGGQRQRAMIAMALACSPKLLLADEPTTALDVTVRMQILQLLRDLQAEYGMAVMLITHDLNMVRAFAERVGVM
ERGVLVETGDTAAIFNAPQHPYTVRLLESRPQRDVLPLVPLAPVLLEADRLSVTYDRHRPGFAGWFRSDPFTAVDQVSLQ
LREGETLGIVGESGSGKTTLVQTLLGLQRPQAGDLRFLGSSLLRQTRDERRAVRARMQVVFQDPFGSLSPRMTIEQIVEE
GLALHQPHINVTERRHRVTEALRDVGLDRTALGRYPHEFSGGQRQRIAIARVLILKPQVLVLDEPTSALDVSIQQQVLSL
LSALQKKYNLSYLFISHDLAVIRAMSHRVMVMKDGKVVEEGDTEAVLASPSHAYTRKLMAAAALPPLQPPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 1e-73 43
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 1e-73 43
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 1e-73 43
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 1e-73 43
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 3e-88 43