Gene Information

Name : RCFBP_11461 (RCFBP_11461)
Accession : YP_003745377.1
Strain : Ralstonia solanacearum CFBP2957
Genome accession: NC_014307
Putative virulence/resistance : Unknown
Product : prophage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1501959 - 1503176 bp
Length : 1218 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type h : extrachromosomal origin

DNA sequence :
ATGGCACTCACCGACACCGCAATCCGCAACGCCAAGGCTGCCGACAAGCCCATCAAGCTGTTCGATGGCGGCGGCTTGTT
TCTCCACATCACGCCCGCCGGGCAGCGCTACTGGCGGCTGAAGTATCGGTTCGCGGGCAAAGAGAAGCTGCTGGCCATTG
GCGTCTACCCGGAAGTCGGCCTGAAAGAGGCGAGGGACCGGCGTGAGGAAGCCAAACGGCTGCTGGGCGAGGGCGTTGAT
CCGTCAGTCGAGCGCAAGGTGCGAAAGGTGGCGACGGTCGAGCGGGCGGCGAACAGTTTTGAAGCCGTGGCACGCGAGTG
GCACGCCAAGTACGCACCGGGCTGGTCCGAGAGCAACGCCAAGAAGGTGCTGGCCCGCCTGGAGAACGACGTGTTTCCAT
GGCTGGGTGGTCGGCCGATCGCCGAACTGAAGGCGCCCGAGCTGCTAGGTGTGGCCCGCCGCGTTGAGTCCCGCGGTGCC
CTCGATACGGCGCACCGTGTGCTGCAAACCTGCGGCCAGATCTTCCGCTACGCAGTCGCCACCGGCCGGGCAGAGCGCGA
CCCGTCCGGCGATTTGCGGGGGGCGCTGCCGCCGGCCAAGGGGAAGCACTACGCCGCGCCGACCGATCCGAGGGAGGTGG
CTGGGTTGCTGCGCATGTTTGACGGCTTCACCGGCACATTCGTCGTGAAGTGCGCGCTGCTGCTGGCGCCGATGCTTTTC
GTTCGGCCTGGTGAGCTGCGGGCAGCCGAATGGGCGGACATCGACCTGGATGCGGGCGAGTGGCGTTTCGTGTCATCCAA
GCGGGATGTGGCCCATATCGTGCCGCTATCCACCCAGGCCGTCGCAATCCTGCGTGACCTGCACGCGCTGACCGGTCATG
GGCGTTACCTCTTTCCTGGTGCGCGGGACAAGAGCAAACCCATGTCGGAGGCTGCGATCAATGCGGCGCTCAAGCGCATG
GGTATCGACACACAGAAGGAGTTCACCGGCCACGGCGTGCGCCCCATTGCGCGCACCATCCTGCGCGAGGTGCTGGGCTT
CGAGGCCGAGGTGATCGAGCTGCAACTGGCGCACCGCAAGAAAGACCCGAACGGGGCGGCGTATGACCGTGTGGCCTTCC
TGGCCGTCCGCAAGCAGATGATGCAGGCGTGGGCAGACTACCTGGACGAGATCAAGGCCGGAGCCAAGGTGCTGCCGCTC
AAGGGTTCCGCCGCGTAG

Protein sequence :
MALTDTAIRNAKAADKPIKLFDGGGLFLHITPAGQRYWRLKYRFAGKEKLLAIGVYPEVGLKEARDRREEAKRLLGEGVD
PSVERKVRKVATVERAANSFEAVAREWHAKYAPGWSESNAKKVLARLENDVFPWLGGRPIAELKAPELLGVARRVESRGA
LDTAHRVLQTCGQIFRYAVATGRAERDPSGDLRGALPPAKGKHYAAPTDPREVAGLLRMFDGFTGTFVVKCALLLAPMLF
VRPGELRAAEWADIDLDAGEWRFVSSKRDVAHIVPLSTQAVAILRDLHALTGHGRYLFPGARDKSKPMSEAAINAALKRM
GIDTQKEFTGHGVRPIARTILREVLGFEAEVIELQLAHRKKDPNGAAYDRVAFLAVRKQMMQAWADYLDEIKAGAKVLPL
KGSAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 9e-68 44
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 5e-68 44
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 5e-68 44
int CAC39282.1 integrase Not tested LPA Protein 2e-70 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-70 43
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-71 43
int AAD44730.1 Int Not tested SHI-2 Protein 1e-69 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-70 43
int ACU09430.1 integrase Not tested LEE Protein 5e-70 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 6e-70 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 6e-70 43
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-66 43
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-66 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-68 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-68 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-68 42
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-65 42
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 9e-65 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 4e-65 42
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-65 42
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-65 42
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 8e-66 42
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 5e-66 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-64 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-64 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 4e-65 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-64 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-64 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 9e-64 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-64 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-64 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-64 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 6e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RCFBP_11461 YP_003745377.1 prophage integrase VFG0783 Protein 3e-70 43
RCFBP_11461 YP_003745377.1 prophage integrase VFG0598 Protein 2e-68 42
RCFBP_11461 YP_003745377.1 prophage integrase VFG0626 Protein 4e-66 42
RCFBP_11461 YP_003745377.1 prophage integrase VFG1693 Protein 2e-65 41