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Name : hofB (EbC_07370) Accession : YP_003740128.1 Strain : Erwinia billingiae Eb661 Genome accession: NC_014306 Putative virulence/resistance : Virulence Product : transport protein HofB (type II secretion system) Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 884698 - 886095 bp Length : 1398 bp Strand : - Note : silverDB:661Eb01006 DNA sequence : ATGATCCTCGAATCTACCCAACGTGCCGTAGAAGCACTTTGCCAACGCCATCACGCGGTGATCGTCAGTTTTACCGCCGA GCGGTTGCAGCTGGCGATGGCGACCCTGCCGGAAGAGGAGCTGCTCGCATCCCTGCGTTTTGCCACCCACTGTGCGCTGG ACATTGAATGCTGGCCGGAGGCACGCCTTGAGCAGTTTCGACAGCAGCAGAAAAACGCCCCTTCTCAGCAACCCACCGCC GCAACCGATCGCGGCGCGCCAGATAAAATCCAGCAACTGTTACTGCTGGCCGTGCAGCGGCGCGCGTCGGATATTCATCT TGAACCGCAGGCCGGTTCGTTAAGGGTCCGCTTACGTGTCGATGGCGTGCTGCAAACCCTCTCCGGCAATGAACAGGATA ACGCCGCAGCCTTGCTGGCACGGCTGAAAATATTGGCCAGTCTGGACATTACCGAACGCCGGACGCCCCAGGATGGCCAG TTTACCGTTGAGCTGAACGGTAACCCGGCGTCGTTCCGCCTCTCGACGTTGCCCACACAGTTTGGCGAAAAGGCCGTTAT CAGGCTGCTGCAAAGCGAGCCGCAGGCGGTGGCGCTGGATAAGTTAGGCATGCCGCCTGCCCTGCTTAAGATTTATTGCC AGGCACTGGCGCGACCGCAGGGTTTGATTCTGGTGACGGGACCGACGGGCAGCGGGAAAACGTTCACGCTTTATAGCGGC TTAAATTCGCTGAACACGCCACAGCGTAATTTATGCAGCGTCGAAGACCCGATTGAGATCCCGCTGGCCGGGATAAACCA GACCCAGATCCACCCGAAAGCCGGGCTGGACTTCAACCTGGTGCTACGCGCCCTGCTGCGCCAGGATCCGGACGTGATTA TGCTGGGCGAGATCCGCGATCGGGAAACGGCAGAAACGGCGGTGAAGGCTGCGCAAACCGGTCACCTGGTGCTGTCGACA CTGCATACCAACTCCACTCTGGAAACCTTAACCCGCCTTGGACAGATTGGCATTCCAGGTTACCTGCTCGCTTCAGCCCT AAAGCTGATTGTCGCCCAGCGGCTGGTGCGTCGTCTTTGCCCGCACTGCCGGCAGAAAAGCGAGGCTGTCGCCCACTTCC CGCCCGCTATCTGGCCCGGCACCGTGCAAAACTGGCAGGCACCGGGTTGTGAGCGTTGCTACTCGGGCTTTTATGGCAGG CTGGCACTGTTCGAGATGCTGCCGATCACCGCGCGGCTGCAAAATGCGATTGCCGCTAACAGCACGGCAGAGCAGCTTGA AATGATTGCCCGCCAGCATGGAAGAAACTCGCTGTTTATCGAAGGACTGCATTGCGTCAATCGTGGCGACACTACCCTTG AGGAACTGAACAGGATCGTCGGCAACAATGATGGCTGA Protein sequence : MILESTQRAVEALCQRHHAVIVSFTAERLQLAMATLPEEELLASLRFATHCALDIECWPEARLEQFRQQQKNAPSQQPTA ATDRGAPDKIQQLLLLAVQRRASDIHLEPQAGSLRVRLRVDGVLQTLSGNEQDNAAALLARLKILASLDITERRTPQDGQ FTVELNGNPASFRLSTLPTQFGEKAVIRLLQSEPQAVALDKLGMPPALLKIYCQALARPQGLILVTGPTGSGKTFTLYSG LNSLNTPQRNLCSVEDPIEIPLAGINQTQIHPKAGLDFNLVLRALLRQDPDVIMLGEIRDRETAETAVKAAQTGHLVLST LHTNSTLETLTRLGQIGIPGYLLASALKLIVAQRLVRRLCPHCRQKSEAVAHFPPAIWPGTVQNWQAPGCERCYSGFYGR LALFEMLPITARLQNAIAANSTAEQLEMIARQHGRNSLFIEGLHCVNRGDTTLEELNRIVGNNDG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-63 | 44 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 9e-63 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_003740128.1 | transport protein HofB (type II secretion system) | VFG2426 | Protein | 4e-68 | 48 |
| hofB | YP_003740128.1 | transport protein HofB (type II secretion system) | VFG2048 | Protein | 3e-64 | 45 |
| hofB | YP_003740128.1 | transport protein HofB (type II secretion system) | VFG0182 | Protein | 7e-62 | 45 |
| hofB | YP_003740128.1 | transport protein HofB (type II secretion system) | VFG1876 | Protein | 3e-64 | 43 |
