Gene Information

Name : pmrA (EbC_40140)
Accession : YP_003743392.1
Strain : Erwinia billingiae Eb661
Genome accession: NC_014306
Putative virulence/resistance : Virulence
Product : two-component system response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4482103 - 4482765 bp
Length : 663 bp
Strand : +
Note : silverDB:661Eb05260

DNA sequence : 
ATGAAACTACTGGTTGTTGAAGATGATGCTTTGCTGTTGGGCGGACTGGTTCAGGCGCTGACGACTGAAGGGTATGCGGT
GGATGCGGCTAAGAATGGCGCTGAAGCCTGTGCTCTGCTGCAAAGCGGCCAGTACAGCCTGATTGTTCTCGATCTTGGGT
TGCCGGATCGGGACGGCAGGCAGCTGCTGCGGCAGTGGCGTAAAGAGACTATCGATCTGCCGGTGCTGATCCTCACTGCC
CGTGATGCCTTAGAGGATCGGGTTGATGGACTGGATGCCGGTGCCGATGATTATCTGGTTAAACCCTTCGCGCTGGCCGA
ATTGAAGGCCAGAGTTCGGGCTTTGATTCGCCGTTATCAGGGTCGCAGCGATAACCTGCTGCAACAGGGCGATCTCTCCC
TTAACCTGTCTTCTCAGCAAGTTTATATAGACAATCAGCCTGTTGAGCTGACGCCGAAAGAGTTTGCGCTGCTGACGCGT
CTATTGATGCGCATCAGTCAGACGGTGCATCGTGAAACGCTGCAACAAGATCTTTATAGCTGGCAGGATGATACCGGCTC
TAACACGCTTGAGGTGCATATTCACAACTTGCGCCGCAAGCTGGGCAAAGACCGCATCAAGACGGTGCGTGGCGTAGGAT
ATCGTCTGGAAGAACGCACTTGA

Protein sequence : 
MKLLVVEDDALLLGGLVQALTTEGYAVDAAKNGAEACALLQSGQYSLIVLDLGLPDRDGRQLLRQWRKETIDLPVLILTA
RDALEDRVDGLDAGADDYLVKPFALAELKARVRALIRRYQGRSDNLLQQGDLSLNLSSQQVYIDNQPVELTPKEFALLTR
LLMRISQTVHRETLQQDLYSWQDDTGSNTLEVHIHNLRRKLGKDRIKTVRGVGYRLEERT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-40 48
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-31 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pmrA YP_003743392.1 two-component system response regulator BAC0487 Protein 8e-59 63
pmrA YP_003743392.1 two-component system response regulator NC_002516.2.879194.p Protein 4e-36 44
pmrA YP_003743392.1 two-component system response regulator BAC0111 Protein 2e-33 42
pmrA YP_003743392.1 two-component system response regulator BAC0347 Protein 4e-32 41
pmrA YP_003743392.1 two-component system response regulator BAC0083 Protein 4e-31 41
pmrA YP_003743392.1 two-component system response regulator CP001918.1.gene5135. Protein 3e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pmrA YP_003743392.1 two-component system response regulator VFG0473 Protein 1e-57 58
pmrA YP_003743392.1 two-component system response regulator VFG0596 Protein 3e-31 43
pmrA YP_003743392.1 two-component system response regulator VFG1390 Protein 2e-30 42