Gene Information

Name : soxS (EbC_03530)
Accession : YP_003739744.1
Strain : Erwinia billingiae Eb661
Genome accession: NC_014306
Putative virulence/resistance : Resistance
Product : regulatory protein SoxS
Function : -
COG functional category : K : Transcription
COG ID : COG4977
EC number : -
Position : 419677 - 420105 bp
Length : 429 bp
Strand : -
Note : silverDB:661Eb00463

DNA sequence : 
ATGCATGACGACATCATCCACACCCTTACCGACTGGATTGAAACCAACCTGGATAAAACCCTGTCGATTGATGAAGTGGC
CGCGAAATCGGGCTATTCGAAGTGGCATTTGCAGCGGATGTTCCGCACCGTCACCAAACAGACGTTGGGCGGCTATATTC
GTGAGCGTCGGCTGACGCTGGCGGCCGAAGCGCTGAGTCAGACCCAGCGCCCGGTTTTTGATATTGCCATGCAGTACGGT
TACGACTCGCAGCAGACCTTCTCCCGCGTGTTCCGCCGCCAGTTCTCGCAGACGCCGACTGCCTACCGTCACACCATGCG
CCGTCAGTCGCTGACCCGCCAGGTGAGCTACAGCTTCGACTGCAGCGACTTTGCCAGCTCCGCTTACGGCAAAGTGCAGC
AGGACAGCAACAGCCCGGCCTGCAACTAG

Protein sequence : 
MHDDIIHTLTDWIETNLDKTLSIDEVAAKSGYSKWHLQRMFRTVTKQTLGGYIRERRLTLAAEALSQTQRPVFDIAMQYG
YDSQQTFSRVFRRQFSQTPTAYRHTMRRQSLTRQVSYSFDCSDFASSAYGKVQQDSNSPACN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 3e-33 67
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 2e-22 49
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 2e-22 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_003739744.1 regulatory protein SoxS CP000647.1.gene4499. Protein 2e-34 70
soxS YP_003739744.1 regulatory protein SoxS CP001918.1.gene327.p Protein 2e-34 68
soxS YP_003739744.1 regulatory protein SoxS CP000034.1.gene4505. Protein 7e-33 67
soxS YP_003739744.1 regulatory protein SoxS BAC0371 Protein 4e-33 67
soxS YP_003739744.1 regulatory protein SoxS NC_002695.1.914293.p Protein 4e-33 67
soxS YP_003739744.1 regulatory protein SoxS CP001138.1.gene4488. Protein 1e-33 67
soxS YP_003739744.1 regulatory protein SoxS CP001138.1.gene612.p Protein 2e-26 50
soxS YP_003739744.1 regulatory protein SoxS NC_010558.1.6276025. Protein 1e-22 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_003739744.1 regulatory protein SoxS VFG0585 Protein 9e-34 67
soxS YP_003739744.1 regulatory protein SoxS VFG1038 Protein 1e-22 49