Gene Information

Name : dnaB (EbC_03160)
Accession : YP_003739707.1
Strain : Erwinia billingiae Eb661
Genome accession: NC_014306
Putative virulence/resistance : Unknown
Product : Replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 377817 - 379232 bp
Length : 1416 bp
Strand : +
Note : silverDB:661Eb00409

DNA sequence :
ATGGCAGGAAATAAACCCACCAACAAATCCAACGAAAACCGTGAACCGCGCGACCGGCAGATGGAAGGCCTGAAGTTGCC
GCCGCATTCTCTGGAAGCGGAACAGTCCGTGTTGGGCGGGTTAATGCTGGATAACGAACGCTGGGATAACGTCTCCGAAC
GCGTGGTCGCGCTGGACTTCTTCAGCCGCCCGCACCGGATGATCTTCAGCGAAATGCAGCGCCTGCTGGAACTGGGCAAA
CCCATCGATTTGATCACCCTGTCTGAATCGCTGGAAACCAAAAACGAGCTGAATCTGGTTGGCGGATTCGCCTATCTGGC
CGAACTGTCGAAAAACACCCCAAGTGCGGCGAACATCGGTGCCTATGCGGATATCGTGCGCGAACGTGCGGTGGTGCGTG
AGATGATCTCGGTGGCGAATGAAATTGCCGATGCGGGTTACGATCCGCAGGGACGCACCAGCGAAGATCTGCTCGATCTG
GCGGAATCCCGCGTGTTCCAGATCGCCGAAAGCCGGGCCAATAAAGATACCGGCCCGAAGAGTGTCGATCAGATCCTTGA
GGCGACGATCGCCAGGATCGAATCGCTGTATCAGACGCCGCACGATGGTGTAACCGGCGTGGATACCGGCTATCAGGATC
TGAACAAGAAGACCGCCGGTCTGCAGCGTTCGGATCTGATTATCGTCGCGGCGCGTCCGGCGATGGGTAAAACCACCTTC
GCCATGAACCTGTGTGAAAACGCCGCGATGCTGCAGGACAAACCGGTGCTGATTTTCAGTCTGGAGATGCCCGGCGAACA
GATCATGATGCGTATGCTGGCGTCACTTTCCCGCGTCGATCAAACCCGTATCCGTACCGGCCAGCTCGATGATGAGGATT
GGGCGCGTATCTCCAGCACCATGGGCATTCTGCTGGAGAAAAAGAACATGTTTATCGATGACTCCTCGGGCCTGACGCCG
ACGGAAGTCCGCTCCCGTGCCCGCCGCATCTTCCGCGAACACGGCGGCCTGAGCATGATCATGATCGATTACCTTCAGCT
GATGCGCGTGCCGTCGCTTTCTGACAACCGTACGTTAGAAATTGCCGAAATCTCCCGTTCCCTTAAGGCGCTGGCGAAAG
AGCTTCAGGTGCCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCGCTGGAGCAGCGTGCCGATAAGCGCCCGGTCAACTCC
GACCTGCGTGAATCAGGCTCCATCGAGCAGGATGCCGACTTAATCATGTTTATCTACCGTGATGAGGTCTACCACGAAAA
CAGCGATCAGAAAGGCATTGCGGAAATCATTCTGGGTAAACAGCGTAACGGCCCGATCGGCACGGTGCGCCTGACCTTCA
ACGGTCAGTGGTCGCGTTTTGATAACTACGCTGGCCCGCAATACGACGACGAATAA

Protein sequence :
MAGNKPTNKSNENREPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVVALDFFSRPHRMIFSEMQRLLELGK
PIDLITLSESLETKNELNLVGGFAYLAELSKNTPSAANIGAYADIVRERAVVREMISVANEIADAGYDPQGRTSEDLLDL
AESRVFQIAESRANKDTGPKSVDQILEATIARIESLYQTPHDGVTGVDTGYQDLNKKTAGLQRSDLIIVAARPAMGKTTF
AMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISSTMGILLEKKNMFIDDSSGLTP
TEVRSRARRIFREHGGLSMIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNS
DLRESGSIEQDADLIMFIYRDEVYHENSDQKGIAEIILGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 2e-99 53
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 2e-105 53
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 8e-106 53
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 1e-104 52
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 6e-98 49
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 4e-91 49
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 4e-91 49
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 1e-84 48
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 3e-79 45