Gene Information

Name : EbC_27870 (EbC_27870)
Accession : YP_003742165.1
Strain : Erwinia billingiae Eb661
Genome accession: NC_014306
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3108894 - 3109646 bp
Length : 753 bp
Strand : -
Note : silverDB:661Eb03701

DNA sequence :
GTGGCATTACTGAGCCTTGTGCGTGAAGTTTATCGCGAAAGTAACGGCTCAGCAGGAGCGCGAAGCATTGCCGCGATGGT
CACCACCAAAGGTATAAAACTGAGCCGCTGGCGGGCAACAAAGCTAATGAAAGCGCTCAATATTATCAGCTGTCAGCAAC
CTGGCCATCGTTATAAGAAGGCGTCTAAGGAGCACATTGAGATCCCTAATTATCTGGATCGCCAGTTTGCTGTTACCGAG
CCTAATCAGGCCTGGTGCGGTGATGTGACTTATATCTGGACGGGAAAACGCTGGGCTTATCTGGCTGTTGTACTCGATTT
GTTTTCCCGTAAACCGGTTGGCTGGGCGATGTCATTTTTCCCGGATTCTGCACTGACAGCTAAAGCGCTGTCCATGGCCT
GGGAAGCGCGAGGAAAGCCGGCTAATTTACTGTATCACTCGGACCAAGGCAGCCACTATACCAGCAGGAATTTCAGGCAG
TTACTGTGGAGATATCAGATAAAGCAAAGCCTGAGTCGCCGGGGAAATTGCTGGGATAACAGCCCAATGGAACGATTCTT
CAGAAGCCTGAAAACAGAGTGGGTACCGGATAATGGCTACGCGAATTTTAGCGAAGCCAGCACGGCAATAACGAATTACA
TCACAGGATATTACAGCCAGCTCAGACCTCATCAATATAATGGTGGTTTGACGCCGAATGAATCAGAACGATTGTTCTGG
AAAAACTCTAAAGCTGTGGCCAGTTTTTGTTGA

Protein sequence :
MALLSLVREVYRESNGSAGARSIAAMVTTKGIKLSRWRATKLMKALNIISCQQPGHRYKKASKEHIEIPNYLDRQFAVTE
PNQAWCGDVTYIWTGKRWAYLAVVLDLFSRKPVGWAMSFFPDSALTAKALSMAWEARGKPANLLYHSDQGSHYTSRNFRQ
LLWRYQIKQSLSRRGNCWDNSPMERFFRSLKTEWVPDNGYANFSEASTAITNYITGYYSQLRPHQYNGGLTPNESERLFW
KNSKAVASFC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 2e-87 76
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 2e-87 76
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-89 72
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-89 72
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-89 72
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-89 72
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 6e-89 72
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-89 72
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 6e-89 72
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 5e-89 72
unnamed AAC31485.1 L0006 Not tested LEE Protein 9e-65 61
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 1e-64 61
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 7e-67 60
Z5089 NP_290241.1 transposase Not tested LEE Protein 1e-66 60
unnamed CAI43898.1 putative transposase Not tested LEE Protein 1e-66 59
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 1e-66 59
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 5e-70 59
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 7e-60 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EbC_27870 YP_003742165.1 transposase VFG1484 Protein 1e-87 76
EbC_27870 YP_003742165.1 transposase VFG1122 Protein 3e-89 72
EbC_27870 YP_003742165.1 transposase VFG0785 Protein 4e-67 60