Gene Information

Name : copR (EbC_25590)
Accession : YP_003741937.1
Strain : Erwinia billingiae Eb661
Genome accession: NC_014306
Putative virulence/resistance : Virulence
Product : transcriptional activator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2875781 - 2876470 bp
Length : 690 bp
Strand : -
Note : silverDB:661Eb03412

DNA sequence : 
ATGCGAATATTGTTTGTCGAGGACGAAGAGAAAACCTCCTCCTATCTTAGCCGGGCGCTGGGTGAATCCGGCTTTACCGT
CGATGTTTCTGCCGACGGGACGGAAGGGTTGTACTACGCGTTGGAATTTGATTACGACGCTGTCATCCTCGACGTCATGC
TGCCAGGGATGGATGGCTATCGCGTGCTTGAAGGGATCCGCGCGAGCAAACAAACGCCGGTGCTGATGCTCTCTGCCCGT
GGCTCGGTTGATGAGCGGGTGAAGGGCCTGCGGCTCGGGGCGGATGATTATCTGCCAAAGCCTTTTTCCCTGATAGAGCT
GGTTGCGCGTATTCAGGCGCTGGTTCGTCGCCGCGCGACGGATGGCGCCGATATTACCCAATTACATATTCACGACCTCC
ATCTGGATTTGTTGGCGCGGCGGGTTGTCCGCGCCGGCAACCGGCTGGAGCTGACGGCGAAAGAGTTTGCACTGCTCAGC
CTGCTGGCCCGTCATCAGGGGGAAATCCTGTCAAAAATGATGATTGCAGAACAGGTCTGGGATATGAATTTCGACAGCGA
TGCCAACGTGGTTGAAGTGGCCATAAAGCGCCTGCGCGCCAAAATTGATGCGCCCTTCGACGTCAAACTGCTGCATACCG
TGCGGGGAATGGGCTACGTACTGGAAGTCAGGTCACAGCCTCAGCCCTGA

Protein sequence : 
MRILFVEDEEKTSSYLSRALGESGFTVDVSADGTEGLYYALEFDYDAVILDVMLPGMDGYRVLEGIRASKQTPVLMLSAR
GSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRATDGADITQLHIHDLHLDLLARRVVRAGNRLELTAKEFALLS
LLARHQGEILSKMMIAEQVWDMNFDSDANVVEVAIKRLRAKIDAPFDVKLLHTVRGMGYVLEVRSQPQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-50 49
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-49 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_003741937.1 transcriptional activator BAC0083 Protein 5e-56 60
copR YP_003741937.1 transcriptional activator BAC0197 Protein 3e-56 59
copR YP_003741937.1 transcriptional activator BAC0638 Protein 2e-51 58
copR YP_003741937.1 transcriptional activator BAC0125 Protein 3e-57 57
copR YP_003741937.1 transcriptional activator BAC0111 Protein 5e-55 53
copR YP_003741937.1 transcriptional activator BAC0347 Protein 4e-48 51
copR YP_003741937.1 transcriptional activator BAC0308 Protein 6e-52 50
copR YP_003741937.1 transcriptional activator AE000516.2.gene3505. Protein 6e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_003741937.1 transcriptional activator VFG0596 Protein 1e-50 49
copR YP_003741937.1 transcriptional activator VFG1389 Protein 8e-36 46
copR YP_003741937.1 transcriptional activator VFG1390 Protein 3e-35 44
copR YP_003741937.1 transcriptional activator VFG1386 Protein 4e-33 44