Gene Information

Name : EbC_20480 (EbC_20480)
Accession : YP_003741429.1
Strain : Erwinia billingiae Eb661
Genome accession: NC_014306
Putative virulence/resistance : Resistance
Product : transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 2315131 - 2315472 bp
Length : 342 bp
Strand : +
Note : silverDB:661Eb02754

DNA sequence : 
ATGAGCCATGATGATTTTATTACCGATCTCGTAAAGTGGATCGACACCCACATCGAAGGGAAAATGGATCTGGATACCGT
TGCCGATCGGGCCGGGTATTCGAAATGGCACCTGCAACGGATGTTCAAGCAGCATACCGGCTACGCACTGGGCGAATACA
TCCGCGCACGTCGTCTGAAAAAATCTGCTGAGCGCCTGGCAACGGGTGGTGAGCCGATTCTGGATGTGGCGATTTCGTTT
GGATTTGATTCCCAGCAGTCGTTCAACCGCAGCTTCAAACGTCAGTTTGGTCAGTCTCCGGGCGCATGGCGTCGACAGGT
TCAGGTCAGCGCCTGTTCATAA

Protein sequence : 
MSHDDFITDLVKWIDTHIEGKMDLDTVADRAGYSKWHLQRMFKQHTGYALGEYIRARRLKKSAERLATGGEPILDVAISF
GFDSQQSFNRSFKRQFGQSPGAWRRQVQVSACS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 6e-24 48
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 1e-20 47
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 1e-20 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EbC_20480 YP_003741429.1 transcriptional regulator BAC0371 Protein 1e-24 49
EbC_20480 YP_003741429.1 transcriptional regulator NC_002695.1.914293.p Protein 1e-24 49
EbC_20480 YP_003741429.1 transcriptional regulator CP000647.1.gene4499. Protein 4e-25 49
EbC_20480 YP_003741429.1 transcriptional regulator CP001138.1.gene4488. Protein 2e-24 48
EbC_20480 YP_003741429.1 transcriptional regulator CP000034.1.gene4505. Protein 2e-24 48
EbC_20480 YP_003741429.1 transcriptional regulator CP001918.1.gene327.p Protein 1e-24 47
EbC_20480 YP_003741429.1 transcriptional regulator CP000647.1.gene1624. Protein 8e-24 47
EbC_20480 YP_003741429.1 transcriptional regulator CP001918.1.gene2033. Protein 1e-23 47
EbC_20480 YP_003741429.1 transcriptional regulator NC_010558.1.6276025. Protein 5e-21 47
EbC_20480 YP_003741429.1 transcriptional regulator CP001138.1.gene1637. Protein 2e-23 46
EbC_20480 YP_003741429.1 transcriptional regulator BAC0560 Protein 1e-23 46
EbC_20480 YP_003741429.1 transcriptional regulator NC_002695.1.917339.p Protein 1e-23 46
EbC_20480 YP_003741429.1 transcriptional regulator CP000034.1.gene1596. Protein 1e-23 46
EbC_20480 YP_003741429.1 transcriptional regulator CP001138.1.gene612.p Protein 3e-21 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EbC_20480 YP_003741429.1 transcriptional regulator VFG0585 Protein 2e-24 48
EbC_20480 YP_003741429.1 transcriptional regulator VFG1038 Protein 4e-21 47