Gene Information

Name : sitC (Pvag_pPag30484)
Accession : YP_003730225.1
Strain :
Genome accession: NC_014258
Putative virulence/resistance : Virulence
Product : iron transport system membrane protein SitC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 483598 - 484458 bp
Length : 861 bp
Strand : -
Note : -

DNA sequence :
ATGGCGCTTTTACTGGAACCTTTTGGTTATCACTACATGCTTAACGCGATGTGGGTCTCCGCGATGGTGGGTGGACTCTG
CGCGTTTCTCTCCTGCTATCTGATGCTGAAGGGCTGGTCGCTGATAGGTGACGCGCTTTCACACTCTATTGTACCAGGCG
TCGCGGGCGCTTATATGCTGGGACTGCCATTTGCGCTGGGGGCGTTTCTTTCCGGCGGGCTGGCAGCGGGCAGCATGCTG
TTACTCAATCAGCGCACCCGCTTAAAAGAAGATGCGATCATTGGCCTGATCTTTTCCTCTTTTTTTGGTCTGGGCCTGTT
TATGGTGTCGCTTAATCCGACTGCCGTGAACATACAGACCATTGTGCTGGGCAACATACTGGCGATTGCGCCAGCCGATG
TACTCCAGCTGGCGCTGATTGGCGGGCTGTCGATCATCATTCTGCTGTTTAAGTGGAAAGATCTGATGGTCACCTTCTTT
GATGAGAATCACGCGCGCGCCATCGGACTCCGCCCTGAACGGCTGAAAGTTCTCTTCTTTACGCTGCTGGCGGTCTCTAC
CGTGGCGGCGCTGCAAACTGTCGGTGCCTTTCTGGTGATCTGTCTGGTGGTGACGCCCGGCGCAACCGCCTGGCTACTCA
CCGATCGCTTTCCGCGGCTGCTGATGATTGCTGTCGCGATCGGCAGCATCACCAGTTTTCTGGGTGCCTGGGCGAGTTAC
TACCTGGATGGCGCAACGGGCGGCATCATCGTGGTCGCGCAGACGCTGCTGTTCCTGCTGGCGTTTGTTTTTGCACCAAA
ACATGGCCTGCTGGCTAACCGGCGTCGTGGCCGCCATCACCTTGAAAAGGAGCCTGGCTGA

Protein sequence :
MALLLEPFGYHYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFALGAFLSGGLAAGSML
LLNQRTRLKEDAIIGLIFSSFFGLGLFMVSLNPTAVNIQTIVLGNILAIAPADVLQLALIGGLSIIILLFKWKDLMVTFF
DENHARAIGLRPERLKVLFFTLLAVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLMIAVAIGSITSFLGAWASY
YLDGATGGIIVVAQTLLFLLAFVFAPKHGLLANRRRGRHHLEKEPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-84 86
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-84 86
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-84 86
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-84 86
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-84 86
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-32 41
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-32 41
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-32 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-32 41
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_003730225.1 iron transport system membrane protein SitC BAC0351 Protein 2e-84 86
sitC YP_003730225.1 iron transport system membrane protein SitC BAC0441 Protein 3e-63 69
sitC YP_003730225.1 iron transport system membrane protein SitC BAC0352 Protein 1e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_003730225.1 iron transport system membrane protein SitC VFG0527 Protein 1e-84 86
sitC YP_003730225.1 iron transport system membrane protein SitC VFG0528 Protein 1e-32 41