Gene Information

Name : cag3 (HPB8_723)
Accession : YP_003728744.1
Strain : Helicobacter pylori B8
Genome accession: NC_014256
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein delta
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 700533 - 701978 bp
Length : 1446 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTAGAAAACTGGCAACCGCTGTATCGCTCATAGGCTTACTAATCTCTAACACTCTTTATGCTAAAGAAATAAGTGA
AGCCGATAAGGTTATTAAAGCCACTAAAGAAACTAAAGAGACCAAGAAAGAAGCTAAACGACTCAAAAAAGAAGCTAGAC
AGCGCCAACAGATCCCTGATCATAAGAAACCTCAATATGCCTCTGTTGATGACACAAAAACTCAAGCGCTGTTTGATATA
TACGACACCTTGAATGTGAATGACAAAAGCTTTGGGGATTGGTTTGGTAATAGCGCTTTGAAAGACAAAACCTATCTCTA
CGCTATGGATCTGTTGGATTATAACAATTACTTATCCATAGAAAATCCCATTATCAAAACAAGAGCGATGGGAACTTATG
CGGATTTGATTATCATCACAGGCTCATTAGAGCAAGTCAATGGGTATTACAACATTCTAAAAGCGCTCAACAAACGCAAC
GCTAAGTTTGTGTTAAAAATCAATGAGAACATGCCTTATGCCCAAGCGACTTTTTTAAGAGTGCCAAAAAGAAGCGATCC
TAATGCCCACACGCTTGATAAGGGAGCGGCAATTGATGAGAATAAGCTTTTTGAACAACAAAAGAAAATGTATTTCAATT
ACGCTAACGATGTGATCTGCAGACCCGATGATGAAGTGTGTTCGCCCCTAAGAGATGAGATGGTAGCTATGCCCACTAGC
GATAGCGTTACTCAAAAGCCCAATATCATTGCTCCTTATAGCTTGTATAGACTCAAAGAGACAAATAACGCCAATGAGAC
CCAACCATCACCTTATGCCACCCAAACCGCTCCTGAAAGCAGCAAAGAGAAGCTTATAGAAGAGCTAATCGCTAACTCCC
AACTCATAGCCAATGAGGAAGAGAGGGAAAAGAAACTCTTAGCAGAAAAAGAAAAACAAGAGGCTGAATTGGCTAAATAC
AAGCTCAAAGACTTAGAAAATCAAAAGAAACTAAAAGCTTTAGAAGCAGAGTTGAAAAAGAAAAACGCTAAGAAACCTAG
AGTAGTGGAAGTGCCTATTTCTCCTCAAACAAGTAATTCTGATGAAACAATGAGAGTTGTCAAAGAAAAAGAGAACTATA
ATGGGTTATTAGTGGATAAAGAGACCACGATCAAAAGAAGCTATGAGGGGACTTTGATCAGTGAAAATTCTTACAGCAAA
AAAACACCTCTCAACCCTAATGACTTGAGGAGCCTAGAAGAAGAAATTAAGAGCTACTATATCAAGTCTAATGGCTTGTG
TTACGCTAATGGCATCAGTCTCTATGCAAAAATCAAAAACGACCCCTATAAAGAGGGAATGCTGTGTGGTTATGAGAGCG
TTCAAAATCTGCTCTCACCTTTAAAGGACAAGCTCAAATACGACAAGCAAAAGTTACAAAAAGCGTTACTGAAAGATTCA
AAGTAA

Protein sequence : 
MFRKLATAVSLIGLLISNTLYAKEISEADKVIKATKETKETKKEAKRLKKEARQRQQIPDHKKPQYASVDDTKTQALFDI
YDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRN
AKFVLKINENMPYAQATFLRVPKRSDPNAHTLDKGAAIDENKLFEQQKKMYFNYANDVICRPDDEVCSPLRDEMVAMPTS
DSVTQKPNIIAPYSLYRLKETNNANETQPSPYATQTAPESSKEKLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKY
KLKDLENQKKLKALEAELKKKNAKKPRVVEVPISPQTSNSDETMRVVKEKENYNGLLVDKETTIKRSYEGTLISENSYSK
KTPLNPNDLRSLEEEIKSYYIKSNGLCYANGISLYAKIKNDPYKEGMLCGYESVQNLLSPLKDKLKYDKQKLQKALLKDS
K

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag3 YP_003728744.1 cag pathogenicity island protein delta Virulence cag PAI Protein 2e-168 100
cag3 AGC69793.1 cag pathogenicity island protein 3 Virulence cag PAI Protein 2e-168 100
cag-delta AAF80193.1 Cag-delta Virulence cag PAI Protein 8e-166 98
HP0522 BAD14021.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-166 98
cag3 AAR03854.1 Cag3 Virulence cag PAI Protein 1e-166 98
HP0522 NP_207318.1 cag pathogenicity island protein (cag3) Virulence cag PAI Protein 9e-167 98
cag3 AAR03914.1 Cag3 Virulence cag PAI Protein 4e-167 98
cag3 AAR03945.1 Cag3 Virulence cag PAI Protein 2e-165 98
HP0522 BAD13774.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-165 97
cag3 YP_005775725.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-163 97
cag3 YP_005777266.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-164 97
cag3 YP_005774547.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-164 97
HP0522 BAD13910.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-164 97
cag3 YP_005779068.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-165 97
HP0522 BAD13801.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-164 97
HP0522 BAD14047.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-164 97
HP0522 BAD13938.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-165 97
HP0522 BAD13855.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-163 97
HP0522 BAD13828.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-165 97
cag3 AAR03885.1 Cag3 Virulence cag PAI Protein 3e-163 97
HP0521 BAD13993.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-164 97
HP0521 BAD13965.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-163 97
HP0522 BAD13883.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-164 96
orf8 NP_223189.1 cag island protein Virulence cag PAI Protein 8e-162 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cag3 YP_003728744.1 cag pathogenicity island protein delta VFG0282 Protein 4e-167 98