Gene Information

Name : cagW (HPB8_714)
Accession : YP_003728735.1
Strain : Helicobacter pylori B8
Genome accession: NC_014256
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein W
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 686835 - 688433 bp
Length : 1599 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAAGGACTTTTTTAATAACGATCATAAGTTTTTTTCTCATTGTTCCTAATTGGTTGAAAGCTATTGATTTGCCCAT
TGTTTCCAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAAAGTTTTGCAG
ATATTTTGACAGGCTATACATCTATTGGTGCATCAGGGAGTGGAAAGAGTTCAGGGCAGGGTGTGATCGAAGCGCTTAGC
ACACCATTAGCCACAAGTTTAGCCGCTAGCAATCTGGTGAAATATTTGAATACTTTAGGTCCTTTATGGGGATCGGCATG
GGCAAGTGTTGCTACAGCTATACAAGGTTTTGCTCTAACGCCATCAAGTGGCTGTAATTTTGGTTGGAACGCATTGATAA
ATAAAAACATAGATGTATCCATGGATAGCGTGCTAGACAATTTGAGCAACAAGATTCAGAATTTTACCAAAGGCGGTGTT
GAGGACAATGTGAAAGGCAATATTCTTTTACAAATAATTGGCTCAATAACCGCTCAAGCTTCTACGAATATTACAGCCGA
TGGTTTAATTTGGCTGATTGGTAAAGAATTCACTGCAAATAAACTGCAAAACAACACTACAGCCATGCTTGCTTTTGTCG
CATTAGAATCTGTTGTCAAAGGAGCGGACGCTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGATATTATCATA
GGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATTTATATTGTTTTTGGGATTTTTGTTTTCATTTCTTTTATGAA
ATTGAGGGATATTTCAAATGGTATTCAGATTAACATAGGTTTTGAATACATGCGATTTGTTGGGGGGACATTATTCAAAA
TGGCGATGGTCTCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCTATTTATTTTGGTTTAGCA
GGCGCTTTTGGGCTAAATCAAGTTCTTTTTTGGGCTTTAGATTTAGTGCTGAATTACACTGTTAATTCAATTTTACCTGC
AGTAAGAGCTGTTTTTTCTAATGTTGGCAACAACGCTCCTAGTTTGTTACAAGGCTTGCAAGTGGCAGGTATTTCTTTGT
TTGCTATTTTTATGCAAGTAACTATCATTATGAGAATAAGCACTGTTGTTGTGAAACCTTTGATAGCGGGGGCTTTTAGC
GGTATTGTGTTCCCTATTGCAGTATGTTTGATCGTTCTAGATTGGTTCAAAGATTCTATGAAAAACATATTGATATGGTT
TATTAATAATTTGTTTATCTTGGTTCTAGCTATTCCTATTTTGCTCTTTGGTGTTTTGGCATTATTGGCATTCAATTTGA
CCATAACGCCCTCTGTTGCTATACAAAACATCAATCAAGGGGGACTAGGTATCGATTCAACTATTGCGAGTTTGATCACC
CTATTTATTTTAAAAGGTTTCATAGAGACGATTATTGAGAGTGTCAATGCGATCGTTAATACCATTTTCAGCTCTGTTTC
TATGGATGGTAGCAGAATGGATAGAGAAAGAGATGCCTTAATGGTTGGAAGAGTTGGTGGATCTATGTTTAAAGGATAA

Protein sequence : 
MKRTFLITIISFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGASGSGKSSGQGVIEALS
TPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSMDSVLDNLSNKIQNFTKGGV
EDNVKGNILLQIIGSITAQASTNITADGLIWLIGKEFTANKLQNNTTAMLAFVALESVVKGADAAVLPAYGVVNLPDIII
GQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGIQINIGFEYMRFVGGTLFKMAMVSFIAYAGFGYLYKISYSIYFGLA
GAFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAGAFS
GIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIASLIT
LFILKGFIETIIESVNAIVNTIFSSVSMDGSRMDRERDALMVGRVGGSMFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagW YP_003728735.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 100
cag9 AAR03892.1 Cag9 Virulence cag PAI Protein 0.0 99
cagW AGC69796.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 99
HP0529 BAD13835.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag-W AAF80200.1 Cag-W Virulence cag PAI Protein 0.0 99
HP0529 BAD13862.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13972.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_005774540.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13890.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13808.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 NP_207325.1 cag pathogenicity island protein (cag9) Virulence cag PAI Protein 0.0 99
HP0529 BAD14028.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD14000.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_005775732.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag9 AAR03864.1 Cag9 Virulence cag PAI Protein 0.0 99
cag9 AAR03953.1 Cag9 Virulence cag PAI Protein 0.0 99
orf16 NP_223196.1 cag island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13917.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag9 AAR03922.1 Cag9 Virulence cag PAI Protein 0.0 99
HP0529 BAD13945.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD14054.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005779061.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13781.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005777273.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagW YP_003728735.1 cag pathogenicity island protein W VFG0289 Protein 0.0 99