Gene Information

Name : cagN (HPB8_705)
Accession : YP_003728726.1
Strain : Helicobacter pylori B8
Genome accession: NC_014256
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein N
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 679297 - 680223 bp
Length : 927 bp
Strand : -
Note : -

DNA sequence : 
ATGATCTTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTCTTTAGTTGTTTATGGGGGCTTAAACGCTAT
CAATACAGCATTATTGCCGAGTGAATACAAAAAATTAGTGGCTTTAGGCTTTAAAAAAATCAAAACACTCTATCAAAGAC
ATGACGACGAAGAAATTACAAAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCG
AGAGCAGAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGGCTAAGCA
CAAAGGATTGCAAGAATTAAACGAAATTAACGCTAACCCTTTGAATGACAACCCTAATAGCAATTCTTCCACTGAAACCA
AATCTAATAAAGATGATAACTTTGATGAGATGATTAATAAGGTGAATGAAGCTTTTGTAAAACCTGCTGCTCCGCTTGTG
CCTAATGAGTGGAGAACACCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAG
AAAGTGTTTGATCAAAGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAA
ATAACAAGTTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCT
TCGTGCGCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATACAAGTGAGTT
TGGGGCTACTGATACAAAAGAAAACGAAGCAAAAGATGCAACATTCTCAAACAATCACTCTAAATCTGAACTGCCCAATA
GCGTCATTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MILKSIFKKLGSVALYSLVVYGGLNAINTALLPSEYKKLVALGFKKIKTLYQRHDDEEITKEEKEFATNALREKLRNDRA
RAEQIQKNIEAFEKKNNSSIQKKAAKHKGLQELNEINANPLNDNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPAAPLV
PNEWRTPEIEIIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIA
SCAICEKRKKEMEQENNYQDTTNTSEFGATDTKENEAKDATFSNNHSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 2e-120 100
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 9e-117 98
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 6e-117 98
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-114 97
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-114 97
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 6e-116 97
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-116 97
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 6e-111 97
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 1e-115 97
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-114 96
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-115 96
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-109 96
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-114 96
cagN AAF80207.2 CagN Virulence cag PAI Protein 8e-116 96
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-109 96
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 4e-116 96
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-111 96
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-108 95
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-108 95
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-108 95
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-109 95
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-108 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 2e-113 95
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-108 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagN YP_003728726.1 cag pathogenicity island protein N VFG0297 Protein 3e-116 97