Gene Information

Name : cagC (HPB8_697)
Accession : YP_003728718.1
Strain : Helicobacter pylori B8
Genome accession: NC_014256
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein C
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 671072 - 671356 bp
Length : 285 bp
Strand : +
Note : -

DNA sequence : 
ATGACAACCAATCCTTTAATGGCGGTCACCAGTCCTGCAGCAGGCGTTACTGAAACTAAAAGTTTGGTTATTCAGATCAT
TTCTGTTCTAGCGATCGTAGGTGGTTGTGCTTTAGGGGTCAAAGGCATAGCGGATATTTGGAAAATCTCTGATGACATCA
AAAGAGGTCAAGCAACTGTTTTTGCTTACGCGCAACCCATAGCTATGTTAGCGGTGGCAGGCGGTATTATCTTTTTGAGC
ACTAAGTTTGGCTTCAATATTGGCGAGAGTGGAGGAGCTAGCTAA

Protein sequence : 
MTTNPLMAVTSPAAGVTETKSLVIQIISVLAIVGGCALGVKGIADIWKISDDIKRGQATVFAYAQPIAMLAVAGGIIFLS
TKFGFNIGESGGAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagC YP_003728718.1 cag pathogenicity island protein C Virulence cag PAI Protein 4e-37 100
HP0546 BAD13934.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-37 98
cagC AGC69805.1 cag pathogenicity island protein C Virulence cag PAI Protein 6e-37 98
cagC NP_223212.1 cag island protein Virulence cag PAI Protein 2e-35 98
HP0546 NP_207342.1 cag pathogenicity island protein (cag25) Virulence cag PAI Protein 4e-35 97
cag25 AAR03908.1 Cag25 Virulence cag PAI Protein 3e-35 97
cag25 AAR03880.1 Cag25 Virulence cag PAI Protein 2e-36 96
HP0546 BAD13907.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-36 96
HP0546 BAD14017.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-36 96
cagC YP_005774525.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-36 96
HP0546 BAD13879.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-36 95
HP0546 BAD14071.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-36 95
HP0546 BAD13798.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-36 95
cagC YP_005775746.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-36 95
cagC YP_005779047.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-36 95
cag25 AAR03938.1 Cag25 Virulence cag PAI Protein 6e-35 95
HP0546 BAD13962.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-36 93
cagC AAC44704.1 CagC Virulence cag PAI Protein 3e-34 93
cagC YP_005777287.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-35 92
HP0546 BAD13852.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-34 92
HP0546 BAD14044.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-35 91
HP0546 BAD13825.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-34 91
HP0546 BAD13989.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-34 90

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagC YP_003728718.1 cag pathogenicity island protein C VFG0305 Protein 1e-35 97