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Name : virD4 (HPB8_538) Accession : YP_003728559.1 Strain : Helicobacter pylori B8 Genome accession: NC_014256 Putative virulence/resistance : Virulence Product : type IV secretion system protein VirD4 Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3505 EC number : - Position : 510833 - 512962 bp Length : 2130 bp Strand : - Note : like traG DNA sequence : ATGAAAATGCAATTTGTGAAGGCTTTTTGCGTGCTTTTTAGCATTTTACTTATCCCCTTATTTTTTATCTTGGCAAATTA TTACACTTTTGATGCCTTAAAGTCGTTGAGACAGGCTTATTTCTTTTCTCAAAGCGTGTTTGTAGGGCTTTATCATGGGG CAAGCATCTTTGATTTAAAATTTGAAGTCTATCTTACTATGCTAATCTCTTTAATGCCCTTTGTGGCTACGATTTATATC AATTTCCCAAAAACCACAGAAACTTCGCATGGCTATGCGAGATGGGCTAATGTTAAAGATATAGAATGCTTTAAAATTTT TAGCAAAGAGGGCTTTTGTAAAGTGGTGCATAGATTAGGGGTGCAATTTGATAATGGCTTTATTCTAGGTAAATTTGGTT TTCCAAAGCTTAGAAATGTGTGCTATGACAAGCCCTTAGGAGCGATGATTGTTGCGCCCCCTGGTGCTGGAAAAACTGCA TGTGTGGCTTTGCCAAATTTATTGACTTTGCCTAATAGCTGTATTATCACTGATATTAAAGGCGAACTAAGAGATAAGAC CGCAGGTTATAGACAAAAATTCTTAAACAATAGAATTTTAATTTTTAATCCTTATGGTGATGATAACACTTGCTATTTCA ATCCTTTTGATAAAAGGATTGTTGAAAAGATGACCTTTGCGGAGCAATTAAGGCATGTTAAAGCAGTAGGCGATGGTATT TTTGTAGATGAAGAAGACCATTGGGTATCTAAAGCTAAAGAGCTTTTTGTCTTTTTTGCTCTTTTACAAGTAGTAACCAA AGGGCATAGCTCTTTTTATGATGTCTCTATCGCACCAGCTAATGATTATGCCCCCTTAATACACCCTAAAAGCCCTTATT ACAAGCAACTTTACCAACACGATAAAAAGACAGGCGAAGTTATCTTAGACCCACAAACTAACGCCCCCATGAAAAATCCC CAAGCTAATGTTTTAAAACTCTTTTTAAATCAAGTGGCTGACCAAAAATACATAGATATGAATGATGAAAAAAACTATGA CCCAAGAGAACCTGAACCCCCTTATGGAACAAAAGGGGCGTTAGATGAGATTATAAGGACAGATGCTAGGAGTTGGGCAA ACACTCCTGATGATGAATTTGGGAGCATTATGTCTTCTTTTAAGCGTTTTATGTATGTCTATAAAGACCCAAAAGTGCGT GAAGCTACTTCTAAAATGAGCTTTGATTATGAAGAATTAAGAACGGGCAATATCAGTATTTACATTGTAATCGCTCAAAT TGATATAGGCACACTTTCTTCTTTAGTAAGAGCCTTTTTAGAGAGTATTGCTAAAAACCTTATGGTCAAAGAAAGCTCTA AACCTGAAGAGCGTATTTTTATCATTGCTGATGAATTTGTTAGATTTGGTAAGTTGCCTTTCTTGTTAGAAATGCCAGCA CTTTGTCGCTCTTATAATGTTGTCCCCTTATTCATCACGCAAGATTATGCGATGATTAGAAAATACTATAGCGATGATGA TTTGAAAATCTTAAAAGGCGTGGTGCATTATAACATTGTCTTTAAGATGAATAGTGCTGAAGATGCTGAGATTGTCTCTA AGGAAGTGGGCGAATTTACAAGACAATCTAAAAATTATTCTACCGAAAAAGGTCAATTGGTCTTTGGAGGTAGCTCTTCT TATAGCCATGAGGGTAGAAACTTACTCACAGCCCAAGATATTATGAATATCAATTCAGATGAAGTCATTGTTATTGTTAC AGGGGCTAAAGCTACCCCCTTAAAACTCAAAGCTAATTATTGGTTCAAAGATAAAGAGCTTTTAAAAAGAGCTAATTTGC CTATTGATTTAGAAGTAGAGAGACAAAGAGTTGAAGAGCCTATACAACCCACTACACCACAAGAGCTTGAAAATTCAAAC TTAAAAGAAAGCGAGAAAGACAATGAAAGTCCCATTACCTTAGAAAATGCTAATGAAAATATAGAGCAAGGAAATCACAA TGAAATTGATGAGATTTTAAAAAAGCCACTGAGTGAAATCAGTATGGAAGAGAAAAGAGCCTTGTTTAAGAAAATGCAAC AAGGCGATGAAGAAAGCGAACAAGAAGTTACACAAAGCACCCAAAGTTAA Protein sequence : MKMQFVKAFCVLFSILLIPLFFILANYYTFDALKSLRQAYFFSQSVFVGLYHGASIFDLKFEVYLTMLISLMPFVATIYI NFPKTTETSHGYARWANVKDIECFKIFSKEGFCKVVHRLGVQFDNGFILGKFGFPKLRNVCYDKPLGAMIVAPPGAGKTA CVALPNLLTLPNSCIITDIKGELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVEKMTFAEQLRHVKAVGDGI FVDEEDHWVSKAKELFVFFALLQVVTKGHSSFYDVSIAPANDYAPLIHPKSPYYKQLYQHDKKTGEVILDPQTNAPMKNP QANVLKLFLNQVADQKYIDMNDEKNYDPREPEPPYGTKGALDEIIRTDARSWANTPDDEFGSIMSSFKRFMYVYKDPKVR EATSKMSFDYEELRTGNISIYIVIAQIDIGTLSSLVRAFLESIAKNLMVKESSKPEERIFIIADEFVRFGKLPFLLEMPA LCRSYNVVPLFITQDYAMIRKYYSDDDLKILKGVVHYNIVFKMNSAEDAEIVSKEVGEFTRQSKNYSTEKGQLVFGGSSS YSHEGRNLLTAQDIMNINSDEVIVIVTGAKATPLKLKANYWFKDKELLKRANLPIDLEVERQRVEEPIQPTTPQELENSN LKESEKDNESPITLENANENIEQGNHNEIDEILKKPLSEISMEEKRALFKKMQQGDEESEQEVTQSTQS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD4-1 | YP_002301090.1 | VirD4 coupling protein | Virulence | cag PAI | Protein | 2e-121 | 51 |
