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Name : lysS (HPB8_1384) Accession : YP_003729405.1 Strain : Helicobacter pylori B8 Genome accession: NC_014256 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase, class II Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1356724 - 1358229 bp Length : 1506 bp Strand : - Note : [KO:K04567], synonyms: lysU, karS, L-lysine-transfer RNA ligase, L-lysine:tRNALys ligase (AMP-forming), lysyl-transfer ribonucleate synthetase DNA sequence : ATGTTTTCTAACCAATACATCCAACAACGCATCCATAAAGCCAATAGCTTGAGAGAAGAAGGCAAAAACCCTTATCAAAA TGGCTTGAAACGAAGCCTTACAAACGCCGCTTTTTTAGAAAAATACGCTTATGTTAAGGGTTTAGAAGAGCCTAAAGACA AAGAAAAATGCGAGAGTATTGTAGGGAGGGTCAAGCTTTTGCGTTTAATGGGTAAGGCATGTTTTATTAAAATTGAAGAT GAAAGCGCGATTTTGCAAGCCTATGTTTCGCAAAATGAATTGAATGATGAGTTTAAAAGCCTAAAAAAGCACTTGGAAGT GGGCGATATTGTGTTGGTGAAAGGTTTCCCTTTTGCTACCAAAACCGGTGAATTAAGCGTTCATGCCCTAGAATTTCATA TTTTAAGCAAAACCATTGTGCCCTTACCTGAAAAGTTTCATGGATTAAGCGATATAGAATTGCGTTACCGCCAGCGCTAC TTGGATTTGATCGTCAATCCTAGCGTTAAAGATGTGTTTAAAAAGCGCAGTTTGATTGTCTCTAGCGTGCGGAAATTTTT TGAAATGAAAGGGTTTTTAGAAGTGGAAACCCCCATGATGCACCCCATTCCTGGCGGGGCGAACGCAAGGCCTTTTATCA CTTACCATAACGCTTTGGAGGTGGAGAGGTATTTAAGAATCGCTCCAGAATTATACCTCAAACGCTTGATTGTGGGGGGG TTTGAAGCGGTGTTTGAAATCAATCGTAATTTCAGAAATGAGGGCATGGATCACAGCCATAATCCCGAATTCACGATGAT TGAATTTTATTGGGCGTATCACACTTATGAAGATTTGATTGAACTCAGTAAGAGGCTATTTGACTACTTGCTAAAGACTT TAAATTTGGATTCAAAAATCATTTATAACGATATGGAAGTGGATTTCAACCAAACGAGCGTGATTTCCTATTTGGACGCT TTAGAAACAATAGGGGGCATTAGTAAGGATATTTTAGAAAAAGAAGACAGGCTTTTGGCTTATTTGTTAGAGCAAGGCAT CAAAGTAGAGCCAAATCTCACTTATGGTAAATTGCTCGCTGAAGCGTTTGATCATTTTGTAGAGCACCAACTCATTAACC CCACTTTTGTAACCCAATACCCTATTGAGATTAGTCCCTTAGCCAGACGCAACGATAGTAACCCTAATATTGCTGACAGG TTTGAATTGTTTATCGCAGGAAAAGAAATTGCTAACGGCTTTAGCGAGTTGAACGATCCTTTAGATCAATTAGAACGCTT TAAAAATCAAGTGGCTGAAAAAGAGAAAGGCGATGAAGAAGCCCAATACATGGATGAAGATTATGTGTGGGCATTAGCCC ATGGAATGCCCCCCACTGCAGGGCAAGGCATAGGCATTGACCGATTAGTGATGTTACTCACTGGAGCTAAAAGCATTAAA GATGTGATTTTATTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATATTGAGAGTGGAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYQNGLKRSLTNAAFLEKYAYVKGLEEPKDKEKCESIVGRVKLLRLMGKACFIKIED ESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPSVKDVFKKRSLIVSSVRKFFEMKGFLEVETPMMHPIPGGANARPFITYHNALEVERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSVISYLDA LETIGGISKDILEKEDRLLAYLLEQGIKVEPNLTYGKLLAEAFDHFVEHQLINPTFVTQYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNIESGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-105 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003729405.1 | lysyl-tRNA synthetase, class II | VFG1668 | Protein | 7e-106 | 50 |
