Gene Information

Name : XNC1_0578 (XNC1_0578)
Accession : YP_003710884.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 494392 - 495963 bp
Length : 1572 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : enzyme

DNA sequence : 
ATGGAGCCCCCATTCCCTGATGATATCGCCCAGCTGAAAGGGCTGCTGCGTGAGCAGATGGCGGCTAACAAGATACTGAC
AGAAAATAATCGCCTGCTGTCTCAGCGGGTGGCCTCTTATGCCAGCGAAATTACCCGACTGAAAGCCCGGGTAGTAAAAC
TGCAACGTATGCAGTTCGGCCAGAGTTCAGAAAAAATACGGCAGAAGGCTGAACGACAGATACGCGAAGTGCAGGCGCAC
ATCAGTCACCTTCAGGAAGAAATGGTCGACATCCTGGGTAAACAACCCGACCCGGCACTGCCTCCTGCGCTGCGGCAGTC
CTCGTCACGAAAACCGTTACCCGCCACCCTGCCCCGCGAAATACAGTTGCTCCTGCCGGCAGAAAAAAACTGCCCTGAAT
GTGGCGGGGAACGGCATGCGCTGGGTTGCGATATCTCAGAACAACTCGAGATCATCAGCAGCGCCTTTAAAGTTATCGAA
ACACAACGCCCCAAGCTGGCCTGCGGTCGGTGTGACGGTATAGTCCAGTCTCCCATGCCGTCCAAACCCATTGAACGCAG
TTATGCCGGTCCTGGACTGCTGGCACGGATCGTGACCGCAAAGTTCGCAGAGCATATGCCGCTGTACCGTCAATCGGAGA
TATATAACCGGCAGGGCGTGGCGTTAAGCCGTGCCACACTGGGTCGCTGGTCCGGGGCAGTGAGTGAACTTCTTGAACCC
CTGTACGATGTGTTACGCCAGTATGTTCTGATGCCGGGCAAAGTCCATGGCGATGATATCCCCGTACCCGTTCAGGCACC
AGGCAACGGTAAAACCCGGACCGGACGCCTGTGGGTGTACGTCCGCGATGACAGAAATGCAGGCTCGGTAATGCCGCCGG
CAGTGTGGTTCGCGTACTCAGCAGATCGCAAAGGCGTTCACCCGCAACAGCATCTGGCAGGCTACAGCGGCGTACTCCAA
GCAGATGCTTACGGCGGGTACCGGGCGTTGTATGAAACAGGGAATATCACTGAGGCCGCCTGCATGGCGCATGCTCGACG
TAAAATCCATGACGTTCACGTTCGTTCGCCAACAGCAATAACGACGGAAGCCCTGAAGCGGATAGGTGAGTTATATGCCA
TAGAAGCAGAAATCCGAGGCAGCCCGGCAGAAGAACGACTGGCATTAAGAAAAGCGCGCAGCGCTCCGCTGATGCAGTTG
TTGTTCGACGGGATACAGCAGCAGAGGGCAACGCTGTCGCGGCACTCAGAGATAGCGAAGGCGTTCGCCTACATGCTGAA
GTTATGGGACAGTCTGAACGAGTACTGCCGTAACGGCTGGATGGAGATCGACAATAATATCGCGGAAAACGCACTGCGTT
GCGTCGCTGTTGGGCGAAAAAACGGGTTGTTCGCGGGTTCTGACAGCGGAGGTGAGCGGGCGGCCATCCTGTACTCATTA
ATCGGCTCCTGTCGTCTTAATGGTGTAGAACCGGAGGCGTGGTTGCGGTACACCATCAGCCATATAGCTGACTGGCCATC
AAACAAGGTACACGAGCTGCTTCCCTGGAAACTCAACCTTACCAACATCTAA

Protein sequence : 
MEPPFPDDIAQLKGLLREQMAANKILTENNRLLSQRVASYASEITRLKARVVKLQRMQFGQSSEKIRQKAERQIREVQAH
ISHLQEEMVDILGKQPDPALPPALRQSSSRKPLPATLPREIQLLLPAEKNCPECGGERHALGCDISEQLEIISSAFKVIE
TQRPKLACGRCDGIVQSPMPSKPIERSYAGPGLLARIVTAKFAEHMPLYRQSEIYNRQGVALSRATLGRWSGAVSELLEP
LYDVLRQYVLMPGKVHGDDIPVPVQAPGNGKTRTGRLWVYVRDDRNAGSVMPPAVWFAYSADRKGVHPQQHLAGYSGVLQ
ADAYGGYRALYETGNITEAACMAHARRKIHDVHVRSPTAITTEALKRIGELYAIEAEIRGSPAEERLALRKARSAPLMQL
LFDGIQQQRATLSRHSEIAKAFAYMLKLWDSLNEYCRNGWMEIDNNIAENALRCVAVGRKNGLFAGSDSGGERAAILYSL
IGSCRLNGVEPEAWLRYTISHIADWPSNKVHELLPWKLNLTNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 0.0 76
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 7e-117 67
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 3e-146 63
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 2e-146 63
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 2e-134 61
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 2e-139 58
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 2e-139 58
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 8e-140 58
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 6e-140 58
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 3e-140 58
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 3e-140 58
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 3e-140 58
tnp AEA34686.1 transposase Not tested Not named Protein 2e-140 58
unnamed AAC31494.1 L0015 Not tested LEE Protein 2e-140 58
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 8e-140 58
unnamed AAL57570.1 unknown Not tested LEE Protein 2e-140 58
unnamed AAL08460.1 unknown Not tested SRL Protein 3e-102 57
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-122 56
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 8e-122 55
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 8e-122 55
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-126 52
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 5e-82 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XNC1_0578 YP_003710884.1 transposase VFG1700 Protein 3e-117 67
XNC1_0578 YP_003710884.1 transposase VFG0793 Protein 1e-140 58
XNC1_0578 YP_003710884.1 transposase VFG1051 Protein 2e-102 57
XNC1_0578 YP_003710884.1 transposase VFG1736 Protein 8e-103 54