|
Name : XNC1_4570 (XNC1_4570) Accession : YP_003714652.1 Strain : Xenorhabdus nematophila ATCC 19061 Genome accession: NC_014228 Putative virulence/resistance : Resistance Product : chloramphenicol resistance protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 4371957 - 4373150 bp Length : 1194 bp Strand : - Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 1648560, 1658833; Product type ph : phenotype DNA sequence : ATGTCTAATCAAAATATTCCTCCTTGGGGATACTCCTTGCCGGCAGCGCTTGCGCTGATGGTTCCATTTGATTTGTTAGC TTCGCTTGCTATGGATGTATATTTGCCTGTGGTGCCTCATATGCCTGCGGATCTGAATACATCCACCTTAGTGGTTCAGC TCAGCTTGAGTTTATACATTCTCATCCTCGGGCTCGGGCAATTGATCTTTGGGCCATTATCTGATCGTATCGGTAGAAGG CCCGTGGTGCTTGGCGGAGCCGCTGCGTTTACCATGACGTCGTTCTGCATTGCAATGGTGAATCGTGGTGACTTATTTTT AGCTCTTAGGGTTATCCAGGCTTTGGGTGCTTCCGCCGCGCTTGTTGGGGTGTTTTCGACTATCCGAGATGTATATGGAA ATAGACCCGAAAGTAGCACTATTTATGGGTTGCTTAGTTCGATTCTTGCCTTTGTTCCTGCGATCGGGCCAATTATAGGC GCGACCCTTGCAGTCAATTGGGGATGGCGCTCGATTTTTTATATGCTAGGTCTAGCGGGCTTGCTATCGCTCCTTCGTGC TTGGCCAAAATGGCATGAGACACGATGGTGTTCCATTAAGGCCTCGGAGTCTACATTCGCTTCTATATTGGCAAGTAGTT CGTTTTGGGTTTATACCCTTGGCTTCAGCACGGCCATGGGGTCTTTTTTTGTTTTCTTTTCTATTGCTCCTCGCGTGCTG ATCGAGGGGGCAGGCTTTTCTCAATTAGGGTTCAGTTTTACGTTCTCCACAGTTGCGGTGATAATGATAATTACCGCTCG ATTCTCGGGCTGGTTCGTAGGGCGCTGGGGAATACAGGGATGCTTTGTTCGAGGTACTACGCTAATAGCGCTAGGCTCGG GGATTCTGGCGGTCTGCTCCGTACTGGGTGAACCACAGTTTGCTACATTCGTGGTGCCGATGTGGGTGATAGCTGTAGGT ATCGTCATGCTCGTTTCAATCACCGCCAACGGTGCCCTTCGAGAATTTGATGATATGGCGGGTACGGCGGTTGCGCTGTA TTTCGGAGTCCAAGGTCTGGTGGTTAGCGGCATTGGAACGGGGATGGTCCTTGTTTTTGGCAACGATAACCCGTGGTCGT TAATATTTTATGCTTGGTTAATGTGTTTGATAAATATTTGTGGATTCTTCGGTTTTAAAAAAGTTCCTGATTAA Protein sequence : MSNQNIPPWGYSLPAALALMVPFDLLASLAMDVYLPVVPHMPADLNTSTLVVQLSLSLYILILGLGQLIFGPLSDRIGRR PVVLGGAAAFTMTSFCIAMVNRGDLFLALRVIQALGASAALVGVFSTIRDVYGNRPESSTIYGLLSSILAFVPAIGPIIG ATLAVNWGWRSIFYMLGLAGLLSLLRAWPKWHETRWCSIKASESTFASILASSSFWVYTLGFSTAMGSFFVFFSIAPRVL IEGAGFSQLGFSFTFSTVAVIMIITARFSGWFVGRWGIQGCFVRGTTLIALGSGILAVCSVLGEPQFATFVVPMWVIAVG IVMLVSITANGALREFDDMAGTAVALYFGVQGLVVSGIGTGMVLVFGNDNPWSLIFYAWLMCLINICGFFGFKKVPD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| floRc | AGK07102.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 8e-83 | 57 |
| floR | YP_005176183.1 | florfenicol / chloramphenicol efflux protein | Not tested | ICEPmu1 | Protein | 6e-83 | 57 |
| flo | AAK02049.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 8e-83 | 57 |
| floRc | AGK06972.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 8e-83 | 57 |
| cmlA9 | ABZ01840.1 | CmlA9 chloramphenicol efflux protein | Not tested | SGI2 | Protein | 3e-84 | 56 |
| cmlA | CAJ77032.1 | chloramphenicol and florfenicol resistance protein | Not tested | AbaR1 | Protein | 3e-84 | 56 |
| cml(A)5 | ACY75522.1 | CmLA(5) | Not tested | Tn6060 | Protein | 3e-66 | 45 |
| cmlA5 | CAJ77046.1 | Chloramphenicol resistance protein | Not tested | AbaR1 | Protein | 3e-66 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| XNC1_4570 | YP_003714652.1 | chloramphenicol resistance protein | DQ522237.1.gene4.p01 | Protein | 2e-66 | 45 |
| XNC1_4570 | YP_003714652.1 | chloramphenicol resistance protein | NC_010410.6003586.p0 | Protein | 2e-66 | 45 |
| XNC1_4570 | YP_003714652.1 | chloramphenicol resistance protein | AF294653.1.gene4.p01 | Protein | 4e-66 | 45 |
| XNC1_4570 | YP_003714652.1 | chloramphenicol resistance protein | DQ984668.gene.p01 | Protein | 2e-66 | 45 |
| XNC1_4570 | YP_003714652.1 | chloramphenicol resistance protein | AF156486.gene.p01 | Protein | 2e-64 | 45 |
