Gene Information

Name : XNC1_4274 (XNC1_4274)
Accession : YP_003714370.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 4111024 - 4112421 bp
Length : 1398 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : enzyme

DNA sequence : 
ATGGAGACCCCATTCCCTGATGATATCGCCCAGCTGAAAGGGCTGCTGCGTGAGCAGATGGCGGCTAACAAGATACTGAC
AGAAAATAATCGCCTGCTGTCTCAGCGGGTGCCCTCTTATACCAGCGAAATTACCCGCCTGAAAGCCCGGGTAGTAAAAC
TGCAACGTATGCAGTTCGGCCAGAGTTCAGAAAAAATACGGCAGAAGGCTGAACGACAGATACGCGAAGTGCAGGCGCAC
ATCAGTCACCTTCAGGAAGAAATGGTCGACATCCTGGGTAAACAACCCGACCCGGCACTGCCTCCTGCGCTGCGGCAGTC
CTCGTCACGAAAACCGTTACCCGCCACCCTGCCCCGCGAAATACAGTTGCTCCTGCCGGCAGAAAAAAACTGCCCTGAAT
GTGGCGGGGAACTGCATGCGCTGGGTTGCGATATCTCAGAACAACTCGGGATCATCAGCAACGCCTTTAAAGTTATCGAA
ACACAACGCCCCAAGCTGGCCTGCGGTCGGTGTGACGGTATAGTCCAGTCTCCCATGCCGTCCAAACCCATTGAACGCAG
TTATGCCGGTCCTGGACTGCTGGCACGGATCGTGACCGCAAAGTTCGCAGAGCATATGCCGCTGTACCGTCAGTCGGAGA
TATATAACCGGCAGGGCGTGGCGTTAAGCCGTGCCACACTGGGTCGCTGGTCCGGGGCAGTGAGTGAACTTCTTGAACCC
CTGTACGATGTGTTACGCCAGTATGTTCTGATGCCGGGCAAAGTCCATGGCGATGATATCCCCGTACCCGTTCAGGCGCC
AGGCAACGGTAAAACCCGGACCGGACGCCTGTGGGTGTACGTCCGCGATGACAGAAATGCAGGCTCGGTCATGCCGCCGG
CCGTGTGGTTCGCATACTCAGCAGATCGCAAAGGCATTCACCCGCAACAGCCCCTGGCAGGCTACAGCGGCGTTCTCCAG
GCAGATGCTTACGGCGGGTACCGGTCGTTGTATGAAACAGGGAATATCACTGAGGCCGCCTGCATGGCGCATGCCCGACG
TAAAATCCATGACGTTCACGTTCGTTCGCCAACAGCAATAACGACGGAAGCCCAGAAGCGGATAGGTGAGTTATATGCCA
TAGAAGCAGAAATCCGGGGCAGCCCGGCAGAAGAACGGCTGGCATTAAGAAAAGCGCGCAGCGCTCCGCTGATGCAGTTG
TTGTTCGACGGGATACAGCAGCAGAGGGCAACGTTGTCGCGGCACTCAGAGACAGCGAAGGCGTTCGCCTACATGCTGAA
GTTATGGGACAGTCTGAACGAGTACTGCCGTAACGGCTGGGTGGAGATCGACAATAATATCGCGGAAAACGCCCTGCGTT
GCGGTTGGGCGAAAAAACTGGCTGTTCGCGGGCTCTGA

Protein sequence : 
METPFPDDIAQLKGLLREQMAANKILTENNRLLSQRVPSYTSEITRLKARVVKLQRMQFGQSSEKIRQKAERQIREVQAH
ISHLQEEMVDILGKQPDPALPPALRQSSSRKPLPATLPREIQLLLPAEKNCPECGGELHALGCDISEQLGIISNAFKVIE
TQRPKLACGRCDGIVQSPMPSKPIERSYAGPGLLARIVTAKFAEHMPLYRQSEIYNRQGVALSRATLGRWSGAVSELLEP
LYDVLRQYVLMPGKVHGDDIPVPVQAPGNGKTRTGRLWVYVRDDRNAGSVMPPAVWFAYSADRKGIHPQQPLAGYSGVLQ
ADAYGGYRSLYETGNITEAACMAHARRKIHDVHVRSPTAITTEAQKRIGELYAIEAEIRGSPAEERLALRKARSAPLMQL
LFDGIQQQRATLSRHSETAKAFAYMLKLWDSLNEYCRNGWVEIDNNIAENALRCGWAKKLAVRGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 4e-131 79
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 6e-166 76
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 2e-144 65
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 3e-144 65
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 1e-111 60
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 1e-116 57
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 1e-115 57
tnp AEA34686.1 transposase Not tested Not named Protein 1e-116 57
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 1e-115 57
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 2e-116 57
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 2e-116 57
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 2e-116 57
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 2e-116 57
unnamed AAC31494.1 L0015 Not tested LEE Protein 1e-116 57
unnamed AAL57570.1 unknown Not tested LEE Protein 1e-116 57
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 4e-116 57
l0015 CAD33775.1 L0015 protein Not tested PAI I 536 Protein 7e-93 56
unnamed AAL08460.1 unknown Not tested SRL Protein 2e-101 56
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 1e-98 55
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 5e-98 53
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 5e-98 53
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-105 50
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 5e-82 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XNC1_4274 YP_003714370.1 transposase VFG1513 Protein 2e-131 79
XNC1_4274 YP_003714370.1 transposase VFG0793 Protein 8e-117 57
XNC1_4274 YP_003714370.1 transposase VFG1516 Protein 4e-93 56
XNC1_4274 YP_003714370.1 transposase VFG1051 Protein 1e-101 56
XNC1_4274 YP_003714370.1 transposase VFG1736 Protein 2e-100 54