Gene Information

Name : intB (XNC1_4251)
Accession : YP_003714347.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 4091211 - 4092467 bp
Length : 1257 bp
Strand : -
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 3119856; Product type h : extrachromosomal origin

DNA sequence : 
ATGAAACTAAACGCCCGACAAATCGAGACTGCGAAGCCCAAAGAAAAAAACTATAAACTTGCCGATGGTGGTGGTTTGTA
TCTGGAAGTTACTTCACGCGGTTCTAAATATTGGCGAATGAAATATCGCCGTCCAACAGATAAAAAAGAAGATCGATTGG
CTTTTGGTGTGTATCCGACGGTGTCCTTAGCTGATGCACGAGCTAAACGAGACGAAGCTAAGAAATTACTTGCTCAAGGG
ATTAATCCCAAAGCCGAACAAAAAGAGGCACAATCCGAATCAGAGGGAGTATTTACTTTCGAGCATATTGCTCGTGAATG
GCGCGCGAGTAATAAACGGTGGAGTGAAGATCATAGTGGCCGGATTATGCGAAGCCTTGAACAATACATATTCCCCCATA
TTGGCGCTCTTGATGTTCGTACTTTGCGAACCAGTCATCTGTTAACTCCTATCAAATCTGTTGATATTAATGGTAAACAT
GACGTAGCTCAACGATTACAACAGCGTGTTACTGCCATCATGCGTTATGCTGTCCAAAATGGCATTCTTGAATATAGCCC
TGCCAATGATATGGCTGGTGCTCTTACTATAGTAAAATCTAAACATCACGCTGCATTACCTCATGAATGCCTACCTGAGT
TTTTGACTCGTCTTTCTTGTTACCGTGGGCGTTTAATTACCCGAATCGCCGTGGAACTAACTTTATTAACGTTTGTTCGT
TCCAGTGAGATGAGGTTTGCCCGTTGGGAAGAGATAGATCTTGAAAGGGCTGTTTGGTGCGTACCTGCAACCAGAAAACT
TATTGAAGGGGTTAAACATTCTCAGCGTGGCATGAAAATGAAAACTGAGCATATTGTGCCGTTGAGTCGTCAGGCTGTAT
TACTTATTGAAAAATTACATGGATTGAGTGGGGATAGTGAAGTGATGTTCCCCGGCGATCACGATCCAAAGAAAGTCATG
AGTGAAAATACCGTAAATAATGCTTTGCGTGCTATGGGCTATGACACTAAAACTGAAGTTTGTGGTCACGGATTACGCAC
AATGGCACGTGGTGCGATGGGAGAATCTGGTCTGTGGAGTGATGATGCAATCGAGCGCCAGTTAAGCCACATCGAAAGAA
ATAACGTCAGGGCGGCTTATATTCACACGTCTAAACATTTGGATGAACGGCGGCTAATGGTGCAGTGGTGGGCTGATTAC
TTGGATGCAAATAGGGAAAAACATATAACACCCTATGATTTTGCGAAAACCTCTTAA

Protein sequence : 
MKLNARQIETAKPKEKNYKLADGGGLYLEVTSRGSKYWRMKYRRPTDKKEDRLAFGVYPTVSLADARAKRDEAKKLLAQG
INPKAEQKEAQSESEGVFTFEHIAREWRASNKRWSEDHSGRIMRSLEQYIFPHIGALDVRTLRTSHLLTPIKSVDINGKH
DVAQRLQQRVTAIMRYAVQNGILEYSPANDMAGALTIVKSKHHAALPHECLPEFLTRLSCYRGRLITRIAVELTLLTFVR
SSEMRFARWEEIDLERAVWCVPATRKLIEGVKHSQRGMKMKTEHIVPLSRQAVLLIEKLHGLSGDSEVMFPGDHDPKKVM
SENTVNNALRAMGYDTKTEVCGHGLRTMARGAMGESGLWSDDAIERQLSHIERNNVRAAYIHTSKHLDERRLMVQWWADY
LDANREKHITPYDFAKTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-150 76
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-104 56
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-113 55
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-113 55
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 6e-114 55
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-114 55
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-114 55
int AAK00456.1 Int Not tested SHI-1 Protein 5e-106 55
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-113 55
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-113 55
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-111 55
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-114 55
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-114 55
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-113 55
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-114 55
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 9e-113 54
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-113 54
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-113 54
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-113 54
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-113 54
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 7e-113 54
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-113 54
int CAC81896.1 integrase Not tested LEE II Protein 4e-106 54
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-105 54
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-105 54
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 2e-100 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 2e-100 53
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 5e-86 48
int CAA08754.1 integrase Not tested HPI Protein 1e-86 47
int2 NP_993013.1 integrase Not tested HPI Protein 4e-86 47
int CAB59974.1 integrase Not tested HPI Protein 1e-87 47
int CAA21384.1 - Not tested HPI Protein 4e-86 47
int YP_002346908.1 integrase Not tested HPI Protein 4e-86 47
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 4e-86 47
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-64 47
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 3e-78 47
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-83 46
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 7e-67 42
int AAD44730.1 Int Not tested SHI-2 Protein 4e-66 42
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-66 42
int CAC39282.1 integrase Not tested LPA Protein 2e-66 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-65 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-65 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-65 42
int ACU09430.1 integrase Not tested LEE Protein 2e-64 41
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-64 41
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-64 41
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intB YP_003714347.1 integrase VFG1536 Protein 7e-105 56
intB YP_003714347.1 integrase VFG0626 Protein 6e-114 55
intB YP_003714347.1 integrase VFG1693 Protein 7e-115 55
intB YP_003714347.1 integrase VFG0598 Protein 1e-65 42
intB YP_003714347.1 integrase VFG0783 Protein 1e-64 41