Gene Information

Name : intB (XNC1_3443)
Accession : YP_003713602.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3342298 - 3343560 bp
Length : 1263 bp
Strand : -
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 3119856; Product type pe : enzyme

DNA sequence :
ATGAAACTAAACGCACGGCAAATCGAAACAGCAAAACCCAAAGAAAAAACCTACAAACTCGCTGATGGTGGCGGACTCTA
TTTGGAGATCACCTCACGCGGCTCTAAATACTGGCGGATGAAGTATCGCCGCCCTACCGATAAAAAAGAAGACCGACTGG
CTTTTGGTGTTTATCCGGTGGTGTCTTTAGCTGATGCACGGGCTAAACGGGATGAAGCCAAAAAACTCATAGCACAAGGC
TCTGACCCCAAAGCAGAGAAAAAAGGGGCACAAACCGAATCAAAAGGGGCACCATCCTTTGAACAGGTAGCCCGTGAATG
GCACGCCAGCAATAAGCGATGGAGTGAAGATCACAGCAATCGCATTCTGCGCAGCCTTGAACATTATATTTTTCCTCATA
TTGGCAGGCTCGATATTTCCACTTTAAGAACAAGCCAACTTTTAGCACCTATCAAATCCGTTGATGCCGATGGTAAACAC
GATATTGCCCAGCGATTACAGCAACGTGTTACCTCTATCATGCGGTATGCTGTCCAGAATGATATTCTTGAATCTAATCC
CGCAAATGATATGTCTGGCGCGCTTTCCACTGTAAAAGCCAAACATCACCCAGCACTCCCTCACGAACGCTTACCTGAAT
TTCTTACCCGTCTTTCTCACTATCGCGGGCGCTTGATTACCCAAATCGCTGTAGAACTGACTTTATTAACGTTTGTCCGT
TCCAGTGAGTTGAGATTTGCCCGTTGGGAAGAACTTGATCTTGAAAATGCAGTCTGGAAAATTCCCGCCACAAGAAAACC
TATTGAAGGCGTTAAATTCTCTGAGCGTGGCATGAAAATGAAAACTGAGCATATTGTGCCACTGAGTCGTCAGGCCGTAT
CTCTCTTTAAAATCTTGCAGGGTTTGAGTGGAGAATGTGAGGTGATGTTTCCTCATGACCATAATCCGGCAAAAGTCATG
AGCGAAAGTACCGTAAATAATGCCTTACGCGGTATGGGGTACGACACCAAAACAGAAGTTTGTGGTCATGGATTTAGAAC
AATGGCGCGTGGTGCTATGGGCGAATCGGGATTATGGAACGATGACGCAATAGAACGCCAGTTAAGCCATGTGGAAAGAA
AGAACGTCCGTGCTGCGTATATTCACACATCTAAGCATCTGGATGAACGGCAGCTAATGGTTCAATGGTGGGCTGATTAT
CTGGATGCAAATAGAGAAAAATATATAACTCCGTATGACTTTGCTAAAAAACGTCGGAAATAA

Protein sequence :
MKLNARQIETAKPKEKTYKLADGGGLYLEITSRGSKYWRMKYRRPTDKKEDRLAFGVYPVVSLADARAKRDEAKKLIAQG
SDPKAEKKGAQTESKGAPSFEQVAREWHASNKRWSEDHSNRILRSLEHYIFPHIGRLDISTLRTSQLLAPIKSVDADGKH
DIAQRLQQRVTSIMRYAVQNDILESNPANDMSGALSTVKAKHHPALPHERLPEFLTRLSHYRGRLITQIAVELTLLTFVR
SSELRFARWEELDLENAVWKIPATRKPIEGVKFSERGMKMKTEHIVPLSRQAVSLFKILQGLSGECEVMFPHDHNPAKVM
SESTVNNALRGMGYDTKTEVCGHGFRTMARGAMGESGLWNDDAIERQLSHVERKNVRAAYIHTSKHLDERQLMVQWWADY
LDANREKYITPYDFAKKRRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-150 74
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-117 57
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-117 57
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-117 57
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-118 57
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-118 57
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-116 56
int AAK00456.1 Int Not tested SHI-1 Protein 3e-108 56
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 9e-116 56
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 9e-116 56
int-phe AAL60261.1 Int-phe Not tested LEE Protein 4e-118 56
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-117 56
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-117 56
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 4e-117 56
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-117 56
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-117 56
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-118 56
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-114 56
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-115 56
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-118 56
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 4e-118 56
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-115 56
int AAL51028.1 CP4-like integrase Not tested LEE Protein 4e-118 56
int CAC81896.1 integrase Not tested LEE II Protein 2e-110 56
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 5e-107 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 8e-106 51
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 8e-106 51
int CAA08754.1 integrase Not tested HPI Protein 6e-95 48
int CAB59974.1 integrase Not tested HPI Protein 5e-95 48
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 1e-85 48
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 7e-70 47
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 3e-94 47
int2 NP_993013.1 integrase Not tested HPI Protein 3e-94 47
int CAA21384.1 - Not tested HPI Protein 3e-94 47
int YP_002346908.1 integrase Not tested HPI Protein 3e-94 47
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 8e-91 47
unnamed AAD17660.1 unknown Not tested HPI Protein 2e-91 46
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 7e-71 43
int AAD44730.1 Int Not tested SHI-2 Protein 7e-69 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-68 42
int ACU09430.1 integrase Not tested LEE Protein 5e-68 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-68 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-68 42
int CAC39282.1 integrase Not tested LPA Protein 2e-69 42
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-69 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-68 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 6e-68 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 6e-68 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intB YP_003713602.1 integrase VFG0626 Protein 4e-116 56
intB YP_003713602.1 integrase VFG1693 Protein 2e-117 56
intB YP_003713602.1 integrase VFG1536 Protein 3e-107 55
intB YP_003713602.1 integrase VFG0783 Protein 3e-68 42
intB YP_003713602.1 integrase VFG0598 Protein 2e-68 42