Gene Information

Name : int (XNC1_3343)
Accession : YP_003713510.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3266847 - 3268061 bp
Length : 1215 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 1720755; Product type h : extrachromosomal origin

DNA sequence :
ATGAAGCTAACAGCCCGACAGGTGGACACTGCAAAGCCGAAAGAGAAACCCTATAAACTTGCAGATGGTGGCGGACTATA
TCTATTGGTTAACCCTAATGGCGCTCGCTATTGGCGGTTGAAGTACCGGATCGCAGGCAAAGAAAAATTACTCGCATTAG
GGGTATATCCTGATATCTCCCTCGCAGAAGCAAGAACCAAGAGAAACGAAGCACGGCGGACACTATCGGATGGCAATGAT
CCGATAGAGGAAAAGAAAGCTGAAAAGGCAGCCAAAGCGTTTGCGGTCAGCAATAGTTTTGAATCCATCGCCATTGAGTG
GCACGAGCATAAACGTCCCAACTGGTCAAAAGGGTATGCCGAAGACATTCTGGAATACCTGAAAAAAGACATCTTCCCGT
ATATTGGTAAACGTGCCGTTACCGAGATTAAACCCGCCGAAATGTTGGCTGTGCTCCGAAAAATGGAGCAACGCGGTGTT
TTGGATAAATTGAAAAAAACCAGACAGGCCTGTCGGCAAATTTTCACCTATGCCGTGATTACAGGGCGGGCAGAGTTCAA
TCCCGTTACTGATCTTGCCAGCGCACTTAAAACACCGAAGCAAAAACATTTCCCACATCTTTTAGCCGACCAAATGAATG
AATTCCTCATCGCCTTGGCGGGCTATAGCGGAAGCGAAGTGACTCAGTCCGCGACACGTTTACTGATGCTTACTGGTGTG
CGTACTATCGAATTAAGAGAATCAGAATGGACTGAATTCGATTTCGATAAGGATATCTGGCAGATACCTGCTGAGCGAAT
GAAAATGCGCCGCCCTCACATCGTCCCGCTATCCAATCAGGTTAAAGCCATTCTTATCAAACTTCACTCTATTACAGGGC
GTGGGAAATACGTTTTCCCCGGACGTAATGATGCGGGTAAACCGATGAGCGAGGCCGCCATTAATCAGGTTATTAAACGC
ATTGGTTATGATGGCAGGGCAACCGGCCACGGTTTCCGCCATACCATGAGTACTATCCTGCATGAACAAGGCTATAACAC
GGCTTGGATTGAAACTCAGCTTGCTCATGTTGATAAGAACAGCATCCGGGGAACTTACAATCACGCCCAATATCTGGAGG
GGCGCAGGGAAATGCTGCAATGGTATGCGGATCATATGGAGATGCTGGAACACGGTGAAAATGTGCTGATCGGAAAAATT
GGCAAAAGGGCGTAA

Protein sequence :
MKLTARQVDTAKPKEKPYKLADGGGLYLLVNPNGARYWRLKYRIAGKEKLLALGVYPDISLAEARTKRNEARRTLSDGND
PIEEKKAEKAAKAFAVSNSFESIAIEWHEHKRPNWSKGYAEDILEYLKKDIFPYIGKRAVTEIKPAEMLAVLRKMEQRGV
LDKLKKTRQACRQIFTYAVITGRAEFNPVTDLASALKTPKQKHFPHLLADQMNEFLIALAGYSGSEVTQSATRLLMLTGV
RTIELRESEWTEFDFDKDIWQIPAERMKMRRPHIVPLSNQVKAILIKLHSITGRGKYVFPGRNDAGKPMSEAAINQVIKR
IGYDGRATGHGFRHTMSTILHEQGYNTAWIETQLAHVDKNSIRGTYNHAQYLEGRREMLQWYADHMEMLEHGENVLIGKI
GKRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 5e-129 65
int CAC39282.1 integrase Not tested LPA Protein 7e-123 62
aec33 AAW51716.1 Int Not tested AGI-3 Protein 7e-123 62
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-123 62
int ACU09430.1 integrase Not tested LEE Protein 3e-123 62
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 4e-123 62
ECs4534 NP_312561.1 integrase Not tested LEE Protein 4e-123 62
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 5e-121 62
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 5e-121 62
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-121 62
int AAD44730.1 Int Not tested SHI-2 Protein 2e-121 61
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-117 59
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 7e-73 43
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 4e-72 42
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-74 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-74 42
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-74 42
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-74 42
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-74 42
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 8e-75 42
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 8e-75 42
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 7e-73 42
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 6e-75 42
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 8e-74 42
int AAL51028.1 CP4-like integrase Not tested LEE Protein 6e-75 42
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 4e-74 42
int-phe AAL60261.1 Int-phe Not tested LEE Protein 6e-75 42
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-73 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-74 42
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-74 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-74 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-74 42
int CAC81896.1 integrase Not tested LEE II Protein 3e-67 42
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 4e-68 42
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 4e-68 42
int AAK00456.1 Int Not tested SHI-1 Protein 3e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
int YP_003713510.1 integrase VFG0783 Protein 2e-123 62
int YP_003713510.1 integrase VFG0598 Protein 2e-121 62
int YP_003713510.1 integrase VFG0626 Protein 5e-75 42
int YP_003713510.1 integrase VFG1693 Protein 4e-74 42