Gene Information

Name : XNC1_2532 (XNC1_2532)
Accession : YP_003712753.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Virulence
Product : ClpA/B-type chaperone
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 2486177 - 2488816 bp
Length : 2640 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf : factor

DNA sequence :
ATGTCAGAAATCAATCGTTCCGTACTTTTTAGTAAACTCAACCGGGTTTTGTTCAATTCTTTGGAAAGCGCCACCACCTT
TTGTAAATTACGGGGTAATCCTTATGTTGAATTAGTTCACTGGCTGCATCAGCTTACGCAGCAGCAAAACAGCGATCTAC
AGCAAATTATCCGTTATTTTTCATTCGATGAATCTGCTCTGACCAAAGACATTGTTGCCGCTCTGGATCGCTTGCCCCGT
GGTGCCAGCGCTATTTCTGATCTTTCAGAGCATATTGATAATTCGGTTGAACGTGCCTGGACATACTGTTCACTGACATT
TGGTGTTGATAAAATCCGCAGTGCACATTTGTTAATCGGGATATTAAAAACGTTTAATTTACGCAATGTACTGAAAGCCA
TTTCAACCCAATTTGACCGGATTAATGCAGATACCTTACTCGACAACGTCAATGAAATTTGCAGCCACAGCGATGAAGCC
CAAGAACGTACCCCGCTCTCAGAAAACAGTACCCAGCCGACAACCCAACAGACAGCGACACATTCCGCCCTGCAACTATC
CGCATTGCAACGCTATGGACAAGAACTGACTGCCCGTGCACGCAACGGTGAAATTGATCCGGTATCAGGGCGTGATGAAG
AAATTCGTCAGATTGTTGACATCCTGATGCGTCGTCGTCAAAACAACCCCCTGCTAACCGGTGAGGCTGGCGTCGGCAAA
ACCGCCGTGATTGAAGGACTGGCATTAAAAATTGTTGCAGAAGAGGTTCCTCCGCCATTGCGTCATGTTCAGCTCTGGTT
ATTGGATATCGGGATGCTACAAGCAGGCGCCGGCGTTAAAGGCGAATTTGAATCCCGGTTACGCAACGTGATTGATGAAG
TACAATCCAGCCCGATCCCAATCATTCTGTTCATTGATGAAATTCACACCTTGATTGGTGCCGGCGGACAACAAGGAACC
GGGGATGCGGCCAATTTGTTAAAACCGGCATTAGCACGTGGCCTGTTGCGTACGCTTGGTGCCACTACCTGGTCTGAATA
TAAAAAATATATCGAAAAAGATCCCGCCCTCACCCGCCGCTTTCAGGTTGTCCAGGTGCATGAACCCGATGAAACCAAAG
CATTGCTGATGCTACGCAGTCTGGTCAATATCCTGGAGAAGCACCACCATGTGCTCTTGCTGGATGAAGCTGTTGACGCT
GCCGTGCGTTTATCACATCGCTATATTCCGGCCCGCCAACTGCCGGATAAAGCCATAGCACTGCTTGATACCGCTTGTGC
CAGAGTTGCAGTCAGCCAGCACGGAGAACCCGCGCAACTGGAAAATTGTCGTCATCAGATAAATGCATTGAAAATTGAGC
TGGAAATCATAAAACGAGAATCCAGGTTAGGCATCGGTGATACGCAACGTTCAGACATTATTCTGGATCAACTCGCCATT
CTGGAAGAACAGAAAACCCAAGTGCAGGAACGCTGGGAACAGGAACTTGCTTTAATCGACAAAATTATTTCCTTACGAAT
TCAATTAAATGAAGAACAGCCTCAGGATACAAAAACCCGGCATGACGAGCTGGCAGAATTACAACAACAATTAAAAATAT
TACAAGGAGAAGAACCCCTTATTTTTGCTGCCGTAGACAGCAATGTGGTTTCTTCTGTGGTGTCAGACTGGACCGGCATT
CCCTTGAACCGCATGGTAAAAGACGAAATCGATTCAGTATTGCAATTAGCCGATACACTCAACCAGCGTGTTATCGGCCA
GTATCACGGATTAGAATTAATCGCAAAACGGGTACGAACCTCACGGGCAAAACTGGATGATCCGAACAAACCAGTTGGTG
TTTTCATGCTATGCGGCCCATCTGGGGTCGGTAAAACGGAAACCGCACTTGCCCTTGCAGAAACGTTATATAGCGGAGAA
CAAAACCTGATCACCATCAATATGAGTGAATTTCAGGAAGCACATACCGTATCTACGTTAAAAGGTGCTCCTCCCGGCTA
TGTCGGTTATGGTGAAGGTGGTGTATTGACCGAAGCAGTCCGACGCCGGCCTTACAGTGTCGTTCTGTTGGATGAAATAG
AAAAAGCGCACCCTGATGTCCATGAAATTTTCTTTCAGGTCTTCGATAAAGGCTGGATGGAAGATGGCGAAGGTCGCCAC
ATTGATTTTAAAAATACGATTATTATTCTGACTTCCAATGTCGGGGCTGATCTGGTCAGTTCACTCTGCACTCAGCAAGA
AACCATGCCAGAACCAGAAAAACTCAGCACGGCATTGCGCAGGCCATTATTGAACGTCTTTCCTGCGGCTTTATTAGGGC
GTTTACTGGTTATTCCTTACTATCCATTAAGTCACAAAGTGATGACAAAAATTGTCTACCTGCAATTAGAAAGGATTCAG
AAACGTTTGTCAGAAAATCATGGCATCACAGCAACATTTGATGATGCCATGGTAGAACACATCGTCAACCGCTGCACCGA
AATTGAATCTGGCGGGCGCATGGTTGATGCTATCCTGACAAATACACTACTGCCACAAATCAGCCAGCAACTGCTTTTTG
CCTCCACCCGTGATAAACAATATCGCCAATTAAACGTATTTCTTGACCAAGGTGAATTTCAATTTGAGTTTATGGATTAG

Protein sequence :
MSEINRSVLFSKLNRVLFNSLESATTFCKLRGNPYVELVHWLHQLTQQQNSDLQQIIRYFSFDESALTKDIVAALDRLPR
GASAISDLSEHIDNSVERAWTYCSLTFGVDKIRSAHLLIGILKTFNLRNVLKAISTQFDRINADTLLDNVNEICSHSDEA
QERTPLSENSTQPTTQQTATHSALQLSALQRYGQELTARARNGEIDPVSGRDEEIRQIVDILMRRRQNNPLLTGEAGVGK
TAVIEGLALKIVAEEVPPPLRHVQLWLLDIGMLQAGAGVKGEFESRLRNVIDEVQSSPIPIILFIDEIHTLIGAGGQQGT
GDAANLLKPALARGLLRTLGATTWSEYKKYIEKDPALTRRFQVVQVHEPDETKALLMLRSLVNILEKHHHVLLLDEAVDA
AVRLSHRYIPARQLPDKAIALLDTACARVAVSQHGEPAQLENCRHQINALKIELEIIKRESRLGIGDTQRSDIILDQLAI
LEEQKTQVQERWEQELALIDKIISLRIQLNEEQPQDTKTRHDELAELQQQLKILQGEEPLIFAAVDSNVVSSVVSDWTGI
PLNRMVKDEIDSVLQLADTLNQRVIGQYHGLELIAKRVRTSRAKLDDPNKPVGVFMLCGPSGVGKTETALALAETLYSGE
QNLITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMEDGEGRH
IDFKNTIIILTSNVGADLVSSLCTQQETMPEPEKLSTALRRPLLNVFPAALLGRLLVIPYYPLSHKVMTKIVYLQLERIQ
KRLSENHGITATFDDAMVEHIVNRCTEIESGGRMVDAILTNTLLPQISQQLLFASTRDKQYRQLNVFLDQGEFQFEFMD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 0.0 55
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 1e-116 47
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-116 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XNC1_2532 YP_003712753.1 ClpA/B-type chaperone VFG2076 Protein 0.0 58
XNC1_2532 YP_003712753.1 ClpA/B-type chaperone VFG2084 Protein 2e-132 43