|
Name : XNC1_2387 (XNC1_2387) Accession : YP_003712613.1 Strain : Xenorhabdus nematophila ATCC 19061 Genome accession: NC_014228 Putative virulence/resistance : Unknown Product : DNA topoisomerase III, type 1 Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 2317629 - 2319815 bp Length : 2187 bp Strand : + Note : - DNA sequence : ATGGACCTTTATATCTGCGAAAAGCCTTCTCAGGCCAAAGACTTGGCAGGAGTAATGAAAGCCTCCCAAAGGGGAGATGG ATTTATCCATGATGGAGGAAACAGAGTTATTACCTGGGCCTTCGGCCACCTTCTGGAATTGTATATGCCAGATGACTATG ACGAACGATATAAGTCATGGTCACTAGAGACTCTTCCCATTGCTCCTGACGCCTGGCGGTACAACGTTCGCAAGAGTGCG CTAAAGCAGTACAAAATCGTTGAAGGCCTAGTCAAAAAAGCAAGTACCATCTACATCTCTACCGACTTCGACCGCGAAGG TGAAGCTATCGCTCGTTCGCTTTTGGATCAATTCCGCTACTCAGGTCCTATTCGTCGTGTTTGCTTGACTGCACTCGATG AGTCGAGCATTAAGAAAGCGCTAAATAACGTTAAGGACGGCAAAGAAACTGTCTCGCTATACTACGCTGCACTAGCAAGG CAACGCGCAGACTGGCTGGTGGGAATGAACGTAAGCCGACTCTATACAGTATTGGCGCGAGATGTAGGTTTCAATCATAC CCTCCACGTAGGTCGGGTCATTACACCTACCGTCGCTCTCGTGTGTCAACGAGATCGAGAGATCGCGGGTTTCACACCAT CCCCATACTGGACTCTGGGCGTGAACGTATCCGTGCAGAATGGTCAGTTTGCCGCTCAGTGGATACCGCCAGAGGAGTGT AGTGACGAACAAGGCCGATGTATCAATAAGGCCTATGCCGAGCAGGTATCCTCTCAGGTCAACGGTGCCAATGCAGTTAT CAGCAAGGCAGAGACAAAACCAGGCAAAGAGTCTGCCCCCCTCCCCTTCGATCTGACGTCGTTACAACAATACGCAAGCA AACGATGGGGATATACTGCTCAGCAGGTACTGGATGCAGCCCAAGCTCTGTACGAGACGCACAAAGCAACAACCTACCCT CGTACCGACAGTCGTTATCTACCCGAGAGCCAAAAGGAGAACATCCCGGACATTCTCCAGGCGCTTATTTTGTCCGATCA GAACGTTTCAGGGCTGGTAGCTGGCGCAGATCCTCACCGCAAAGCCAGAGTATTCAATGACTCTAAAGTGACCGCGCACC ACGCGATCATTCCAACCCCAGCAAGAACAGACATCAGTGCCATGTCTGAGATCGAGTTAAATCTCTACGACGCCATACGT CGTTTCTACATCGCGCAGTTCTACAGTGAGTTCGAGTTCACCAAAACCTCCATCGAGGTGCAGTGTGGACGTCACCTCTT TGCAGCTTCCGGTAAGACTCCGACCAAACAAGGCTGGAAGGTTTTGTTTGCTTCTGACAGCGAAAGCAGCCCCAAGGATG AAGGAGAAGATACCGACGCGCCGGTTGAACAGGAGAAGCTCCCCAGGGTTAGTCAGGGCGAACCTGCCTTGCTCAATGGT ACTGAGCTGATGAACAAAATGACGCGGCCAGCACCACACTTTACAGAAGCCACATTACTTGCCGCGATGGAGAACATTGC CCGGTTTGTGACTGAGGAGAAGTTTAAGCAGATCCTCAAAGACACCGCCGGTCTGGGCACTCCAGCAACACGCGCCAGCA TCATCCAGGGAACTGTAGATAAAGGCTATTTCAAGCGTCAGAAAAAGGTACTGCTTGCAACAGATAAAGCTCATGCACTT ATCGCTGTGCTTCCACCAGCAATCAAGTCACCTGGCATGACTGCGGCCTGGGAACAAGAGCTTGAAAAAGTCGCCACTGG CTCCGGCAACATGTCTGTCTTCATGAAACAGATTTCCACCTGGATTTGCCAGATGGTCGATCAGCTCAAAGTGGCCGCAC CGGTTCTGACCAAAGAAGGCAGTGCGATGGCTAAGGCATTTGAAGGCGCGAAACCTCCCTCACACGAATGCTTCAACTGT GGTGGAGAGATGCACCGAATCAAAGGGAAAAACGGCTTCTTCTGGGGTTGTCAGAACGAGGCTTGCAAAAAGACATTCCC AGACAACAGGGGCAAACCTGAGAAGCGTATCGCTGCGGAGGATTGCCCAGACTGCCCAGATTGCGGTAGCCCGATGCGCC TTAGAAAAGGGAAAGCACCAGGTAAAAAACGAGCCTCTAAGTTTTGGGGTTGCACCGCTTATCCAGACTGCAAAGGCACA ATGCCTTTCAAAAAATCAGACTTATAG Protein sequence : MDLYICEKPSQAKDLAGVMKASQRGDGFIHDGGNRVITWAFGHLLELYMPDDYDERYKSWSLETLPIAPDAWRYNVRKSA LKQYKIVEGLVKKASTIYISTDFDREGEAIARSLLDQFRYSGPIRRVCLTALDESSIKKALNNVKDGKETVSLYYAALAR QRADWLVGMNVSRLYTVLARDVGFNHTLHVGRVITPTVALVCQRDREIAGFTPSPYWTLGVNVSVQNGQFAAQWIPPEEC SDEQGRCINKAYAEQVSSQVNGANAVISKAETKPGKESAPLPFDLTSLQQYASKRWGYTAQQVLDAAQALYETHKATTYP RTDSRYLPESQKENIPDILQALILSDQNVSGLVAGADPHRKARVFNDSKVTAHHAIIPTPARTDISAMSEIELNLYDAIR RFYIAQFYSEFEFTKTSIEVQCGRHLFAASGKTPTKQGWKVLFASDSESSPKDEGEDTDAPVEQEKLPRVSQGEPALLNG TELMNKMTRPAPHFTEATLLAAMENIARFVTEEKFKQILKDTAGLGTPATRASIIQGTVDKGYFKRQKKVLLATDKAHAL IAVLPPAIKSPGMTAAWEQELEKVATGSGNMSVFMKQISTWICQMVDQLKVAAPVLTKEGSAMAKAFEGAKPPSHECFNC GGEMHRIKGKNGFFWGCQNEACKKTFPDNRGKPEKRIAAEDCPDCPDCGSPMRLRKGKAPGKKRASKFWGCTAYPDCKGT MPFKKSDL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-141 | 43 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 1e-132 | 43 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 8e-131 | 43 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 4e-136 | 43 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 2e-140 | 42 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 8e-131 | 41 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 8e-131 | 41 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 6e-131 | 41 |
