Gene Information

Name : XNC1_2350 (XNC1_2350)
Accession : YP_003712584.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 2294283 - 2295854 bp
Length : 1572 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : enzyme

DNA sequence :
ATGGAGACCCCATTCCCTGATGATATCGCCCAGCTGAAAGGGCTGCTGCGTGAGCAGATGGCGGCTAACAAGATACTGAC
AGAAAATAATCGCCTGCTGTCTCCGCGGGTGGCCTCTTATGCCAGCGAAATTAGCCGCCTGAAAGCCCGGGTGGTAAAAC
TGCAACGTATGCAGTTCGGCCAGAGTTCAGAAAAAATACGGCAGAAGGCTGAACGACAGATACGCGAAGTGCAGGCGCAC
ATCAGTCACCTTCAGGAAGAAATGGCCGACATCCTGGGTAAACAACCCGACCCGGCACTGCCTCCTGTGCTGCGGCAGTC
CTCGTCACGAAAACCGTTACCCGCCACCCTGCCCCGCGAAATACAGTTGCTCCTGCCGGCAGAAAAAAACTGCCCTGAAT
GTGGCGGGGAACTGCATACGCTGGGTTGCGATATCTCAGAACAACTCGGGATCATCAGCAGCGCCTTTAAAGTTATCGAA
ACACAACGCCCCAAGCTGGCCTGCGGTCGGTGTGACGGTATAGTCCAGTCTCCCATGCCGTCCAAACCCATTGAACGCAG
TTATGCCAGTCCTGGACTGCTGGCCCGGATCGTGACCGCAAAGTTCGCAGAGCATATGCCGCTGTACCGTCAGTCGGAGA
TATATAACCGGCAGGGCGTGGCGTTAAGCCGTGCCACACTGGGTCGCTGGTCCGGGGCAGTGAGTGAACTTCTTGAACCC
CTGTACGATGTGTTACGCCAGTATGTTCTGATGCCGGGCAAAGTCCATGGCGATGATATCCCCGTACCCGTTCAGGCGCC
AGGCAACGGTAAAACCCGGACCGGACGCCTGTGGGTATACGTCCGCGATGACAGAAATGCAGGCTCGGTCATGCCGCCGG
CCGTGTGGTTCGCATACTCAGCAGATCGCAAAGGCATTCACCCGCAACAGCCCCTGGCAGGCTACAGCGGCGTTCTCCAG
GCAGATGCTTACGGCGGGTACCGGGCGTTGTATGAAACAGGGAATATCACTGAGGCCGCCTGCATGGCGCATGCCCGACG
TAAAATCCATGACGTTCACGTTCGTTCGCCAACAGCAATAACGACGGAAGCCCAGAAGCGGATAGGTGAGTTATATGCCA
TAGAAGCAGAAATCCGGGGCAGCCCGGCAGAAGAACGGCTGGCATTAAGAAAAGCGCGCAGCGCTCCGCTGATGCAGTTG
TTGTTCGACGGGATACAGCAGCAGAGGGCAACGTTGTCGCGGCACTCAGAGACAGCGAAGGCGTTCGCCTACATGCTGAA
GTTATGGGACAGTCTGAACGAGTACTGCCGTAACGGCTGGGTGGAGATCGACAATAATATCGCGGAAAACGCCCTGCGTT
GCGTCGCGGTTGGGCGAAAAAACTGGTTGTTCGCGGGTTCTGACAGCGGAGGTGAGCGGGCGGCCATCCTGTACTCATTA
ATCGGCTCCTGTCGTCTTAATGGTGTAGAACCGGAGGCGTGGTTGCGGTACACCATCAGCCATATAGCTGACTGGCCATC
AAACAAGGTACATGAGCTGCTTCCCTGGAAACTCAACCTTACCAACATCTAA

Protein sequence :
METPFPDDIAQLKGLLREQMAANKILTENNRLLSPRVASYASEISRLKARVVKLQRMQFGQSSEKIRQKAERQIREVQAH
ISHLQEEMADILGKQPDPALPPVLRQSSSRKPLPATLPREIQLLLPAEKNCPECGGELHTLGCDISEQLGIISSAFKVIE
TQRPKLACGRCDGIVQSPMPSKPIERSYASPGLLARIVTAKFAEHMPLYRQSEIYNRQGVALSRATLGRWSGAVSELLEP
LYDVLRQYVLMPGKVHGDDIPVPVQAPGNGKTRTGRLWVYVRDDRNAGSVMPPAVWFAYSADRKGIHPQQPLAGYSGVLQ
ADAYGGYRALYETGNITEAACMAHARRKIHDVHVRSPTAITTEAQKRIGELYAIEAEIRGSPAEERLALRKARSAPLMQL
LFDGIQQQRATLSRHSETAKAFAYMLKLWDSLNEYCRNGWVEIDNNIAENALRCVAVGRKNWLFAGSDSGGERAAILYSL
IGSCRLNGVEPEAWLRYTISHIADWPSNKVHELLPWKLNLTNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 0.0 76
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-114 66
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 3e-147 64
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 2e-147 64
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 4e-133 60
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 5e-138 58
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 2e-138 58
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 5e-138 58
tnp AEA34686.1 transposase Not tested Not named Protein 8e-139 58
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 2e-138 58
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 7e-139 58
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 9e-139 58
unnamed AAC31494.1 L0015 Not tested LEE Protein 6e-139 58
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 9e-139 58
unnamed AAL57570.1 unknown Not tested LEE Protein 6e-139 58
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 5e-139 58
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 3e-121 56
unnamed AAL08460.1 unknown Not tested SRL Protein 1e-100 56
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 1e-120 55
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 1e-120 55
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 6e-127 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XNC1_2350 YP_003712584.1 transposase VFG1700 Protein 6e-115 66
XNC1_2350 YP_003712584.1 transposase VFG0793 Protein 4e-139 58
XNC1_2350 YP_003712584.1 transposase VFG1051 Protein 6e-101 56
XNC1_2350 YP_003712584.1 transposase VFG1736 Protein 3e-101 54