Gene Information

Name : XNC1_2014 (XNC1_2014)
Accession : YP_003712254.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 1895844 - 1897415 bp
Length : 1572 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; Product type e : enzyme

DNA sequence :
ATGGAGACCCCATTCCCTGATGATATCGCCCAGCTGAAAGGGCTGCTGCGTGAGCAGATGGCGGCTAACAAGATACTGGC
AGGAAACAATCGCCTGCTGTCTCAGCGGGTGGCCTCTTATGCCAGCGAAATTACCCGACTGAAAGCCCGGGTAGTAAAAC
TGCAACGTATGCAGTTCGGCCAGAGTTCAGAAAAAATACGGCAGAAGGCTGAACGACAGATACGCGAAGTGCAGGCGCAC
ATCAGTCACCTTCAGGAAGAAATGGTCGACATCCAGGGTAAACAACCCGACCCGGCACTGCCTCCTGCGCTGCGGCAGTC
CTCGTCACGAAAACCGTTACCCGCCACCCTGCCCCGCGAAATACAGTTGCTCCTGCCGGCAGAAAAAAACTGCCCTGAAT
GTGGCGGGGAACTGCATGCGCTGGGTTGCGATATCTCAGAACAACTCGGGATCATCAGCAGCGCTTTTAAAGTTATCGAA
ACACAACGCCCCAAGCTGGCCTGCGGTCGGTGTGACGGTATAGTCCAGTCTCCCATGCCGTCCAAACCCATTGAACGCAG
TTATGCCGGCCCTGGACTGCTGGCACGGATCGTGACCGCAAAGTTCGCAGAGCATATGCCGCTGTACCGTCAGTCGGAGA
TATATAACCGGCAGGGCGTGGCGTTAAGCCGTGCCACACTGGGTCGCTGGTCCGGGGCAGTGAGTGAACTTCTTGAACTC
CTGTACGATGTGTTACGCCAGTATGTTCTGATGCCGGGCAAAGTCCATGGCGATGATATCCCCGTACCCGTTCAGGCACC
AGGCAACGGTAAAACCCGGACCGGACGCCTGTGGGTGTACGTCCGCGATGACAGAAATGCAGGCTCGGTCATGCCGCCGG
CAGTGTGGTTCGCGTACTCAGCAGATCGCAAAGGCGTTCACCCGCAACAGCATCTGGCAGGCTACAGCGGCGTACTCCAA
GCAGATGCTTACGGCGGGTACCGGGCGTTGTATGAAACAGGGAATATCACTGAGGCCGCCTGCATGGCGCATGCCCGACG
TAAAATCCATGACGTTCACGTTCGTTCGCCAACAGCAATAACGACGGAAGCCCAGAAGCGGATAGGTGAGTTATATGCCA
TAGAAGCAGAAATCCGGGGCAGCCCGGCAGAAGAACGGCTGGCATTAAGAAAAGCGCGCAGCGCTCCGCTGATGCAGTTG
TTGTTCGACGGGATACAGCAGCAGAGGGCAACGTTGTCGCGGCACTCAGAGACAGCGAAGGCGTTCGCCTACATGCTGAA
GTTATGGGACAGTCTGAACGAGTACTGCCGTAACGGCTGGGTGGAGATCGACAATAATATCGCGGAAAACGCCCTGCGTT
GCGTCGCTGTTGGGCGAAAAAACTGGTTGTTCGCGGGTTCTGACAGCGGAGGTGAGCGGGCGGCCATCCTGTACTCATTA
ATCGGCTCCTGTCGTCTTAATGGTGTAGAACCGGAGGCGTGGTTGCGGTACACCATCAGCCATATAGCTGACTGGCCATC
AAACAAGGTACATGAGCTGCTTCCCTGGAAACTCAACCTTACCAACATCTAA

Protein sequence :
METPFPDDIAQLKGLLREQMAANKILAGNNRLLSQRVASYASEITRLKARVVKLQRMQFGQSSEKIRQKAERQIREVQAH
ISHLQEEMVDIQGKQPDPALPPALRQSSSRKPLPATLPREIQLLLPAEKNCPECGGELHALGCDISEQLGIISSAFKVIE
TQRPKLACGRCDGIVQSPMPSKPIERSYAGPGLLARIVTAKFAEHMPLYRQSEIYNRQGVALSRATLGRWSGAVSELLEL
LYDVLRQYVLMPGKVHGDDIPVPVQAPGNGKTRTGRLWVYVRDDRNAGSVMPPAVWFAYSADRKGVHPQQHLAGYSGVLQ
ADAYGGYRALYETGNITEAACMAHARRKIHDVHVRSPTAITTEAQKRIGELYAIEAEIRGSPAEERLALRKARSAPLMQL
LFDGIQQQRATLSRHSETAKAFAYMLKLWDSLNEYCRNGWVEIDNNIAENALRCVAVGRKNWLFAGSDSGGERAAILYSL
IGSCRLNGVEPEAWLRYTISHIADWPSNKVHELLPWKLNLTNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 0.0 76
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-114 66
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 1e-147 64
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 6e-148 64
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 2e-133 60
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 5e-138 58
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 1e-138 58
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 5e-138 58
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 2e-138 58
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 6e-139 58
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 7e-139 58
unnamed AAC31494.1 L0015 Not tested LEE Protein 5e-139 58
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 7e-139 58
tnp AEA34686.1 transposase Not tested Not named Protein 5e-139 58
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 1e-138 58
unnamed AAL57570.1 unknown Not tested LEE Protein 4e-139 58
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-121 56
unnamed AAL08460.1 unknown Not tested SRL Protein 1e-100 56
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 9e-123 55
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 9e-123 55
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 1e-126 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XNC1_2014 YP_003712254.1 transposase VFG1700 Protein 5e-115 66
XNC1_2014 YP_003712254.1 transposase VFG0793 Protein 3e-139 58
XNC1_2014 YP_003712254.1 transposase VFG1051 Protein 6e-101 56
XNC1_2014 YP_003712254.1 transposase VFG1736 Protein 1e-101 54