Gene Information

Name : intS (XNC1_1980)
Accession : YP_003712222.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Unknown
Product : CPS-53 (KpLE1) prophage; Sf6-like integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1874685 - 1875815 bp
Length : 1131 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACTAACAGCTCGGCAAGTTGAAACAGTAAAACCCCAAGAGAAAGATTTTAAGCTATCGGATGGCGGCGGTTTGTA
TCTGTTGGTAAAGGTGAATGGCTCCAAATATTGGAGATTGAAATACCGCATTGCAGGGAAAGAAAAACTGCTTGCTATTG
GCACTTTTCCGCTTGTTACGTTGGCAGAGGCCAGAAGAAAGCGTGATGAAGCCAAGAAACTGATAGCCGAAGGTATTGAT
CCCAATCAAGATAAAAAACAGAAGAAACTTGCGGCTCAGGGAGAAATCAGTAACACCTTTGAAAGCATTGCGCGTGAGTG
GTACGAGGGAAGAAAAGACCGATGGTCTGTTGGTTATCGTGAAGATATGATGGACGCTTTCGAAAAAGATGTTTTTCCTT
ATATTGGTCATCGCCCGATTGCTGAAATAAAACCCCTCGAATTATTAGACCTCCTTTCTATTATGGAAAAAAGAGGCGTC
ACCGATAAATTAAAGAAAGTCCGCCAACGCTGTGGTGAAGTTTGGACATATGCAATTATTACTGGCAGGGCAGAATACAA
TCCAGCACCAGATTTAGCGAGTGCTTTTATCCCTCATCAACGCGAACACTATGCTCACCTTTCAGTAGATGAATTACCTG
AATTTCTCCGTTCTATCGATAAATATATGGGAAGCCAGATAGTCAGAACGGCTTTGCGAATGCTTATATTAACGGGTGTT
CGTCCGGGAGAACTTCGCAAGGCTGAATGGTCAGAAATTGATTTAGATAAGGCTGTTTGGACAATCCCAGCTGAAAAAAT
GAAAATGCGCTGTACTCATGTAGTGCCATTATCAGAGCAAGTTATCAATTTATTGAAGCAGATTCAGCCTATCAGCGGCA
ACTATCAATATGTATTCCCAAGCCGGACAGACTACAGAAAGCATATATCTGATATGGCAATCAATACCATGATCCGCCGT
ATGGGATATTCAGGACGAGCGACAGGCCACGGATTCCGACACACCATGAGTACCATCCTGCATGACCAAGACTACAACAC
AGAGTGGGTTGAAAAACAGCTTGCGCACGTCGATAAAAACAGCATCCGAGGTACTTATAGCAGAATCATAATACTATGTC
ATAATACCTAA

Protein sequence : 
MKLTARQVETVKPQEKDFKLSDGGGLYLLVKVNGSKYWRLKYRIAGKEKLLAIGTFPLVTLAEARRKRDEAKKLIAEGID
PNQDKKQKKLAAQGEISNTFESIAREWYEGRKDRWSVGYREDMMDAFEKDVFPYIGHRPIAEIKPLELLDLLSIMEKRGV
TDKLKKVRQRCGEVWTYAIITGRAEYNPAPDLASAFIPHQREHYAHLSVDELPEFLRSIDKYMGSQIVRTALRMLILTGV
RPGELRKAEWSEIDLDKAVWTIPAEKMKMRCTHVVPLSEQVINLLKQIQPISGNYQYVFPSRTDYRKHISDMAINTMIRR
MGYSGRATGHGFRHTMSTILHDQDYNTEWVEKQLAHVDKNSIRGTYSRIIILCHNT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-114 60
int AAD44730.1 Int Not tested SHI-2 Protein 1e-112 60
int CAC39282.1 integrase Not tested LPA Protein 2e-114 60
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-112 60
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-112 60
int ACU09430.1 integrase Not tested LEE Protein 1e-112 60
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-112 60
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-112 60
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-112 60
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-112 60
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-109 58
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 9e-109 56
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-63 41
int AAK00456.1 Int Not tested SHI-1 Protein 2e-62 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-69 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-69 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-69 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-69 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-68 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 5e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intS YP_003712222.1 CPS-53 (KpLE1) prophage; Sf6-like integrase VFG0783 Protein 7e-113 60
intS YP_003712222.1 CPS-53 (KpLE1) prophage; Sf6-like integrase VFG0598 Protein 1e-112 60
intS YP_003712222.1 CPS-53 (KpLE1) prophage; Sf6-like integrase VFG0626 Protein 1e-69 41