Gene Information

Name : XNC1_1851 (XNC1_1851)
Accession : YP_003712095.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Resistance
Product : Regulatory protein pqrA
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 1771882 - 1772262 bp
Length : 381 bp
Strand : -
Note : -

DNA sequence : 
ATGTGGGGGGTAGATATGTTAGAAAGTGTTATCAACGATATTGTCAGATGGCTAGAAAGCCAGCTTCAGCAGACTGAAGG
CATCAAAATTGATGCGATTGCTCATAAAAGTGGCTATTCAAAATGGCATCTGCAACGAATCTTTAAAGAATTGAAAGGCT
GCACACTGGGTCAGTATGTGCGGAGACGTCGCCTTCACGAAGCAGCCAAGTCTTTGCGTGAAGATAATTTGCCTATTCTT
GATATTGCGCTGCAATATGGTTTTAGCTCTCAAGCAACATTTACCCGGATCTTTAAAAAGCATTTTAATACTACCCCGGC
TAAATTCAGGGAGAATGGGCATCTGCCTGAATTCAAAACTTTCCTACAGTGTGGGGAATAA

Protein sequence : 
MWGVDMLESVINDIVRWLESQLQQTEGIKIDAIAHKSGYSKWHLQRIFKELKGCTLGQYVRRRRLHEAAKSLREDNLPIL
DIALQYGFSSQATFTRIFKKHFNTTPAKFRENGHLPEFKTFLQCGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 8e-20 48
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 8e-20 48
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 6e-21 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XNC1_1851 YP_003712095.1 Regulatory protein pqrA CP001138.1.gene612.p Protein 1e-23 48
XNC1_1851 YP_003712095.1 Regulatory protein pqrA CP001918.1.gene2033. Protein 3e-21 48
XNC1_1851 YP_003712095.1 Regulatory protein pqrA NC_010558.1.6276025. Protein 3e-20 48
XNC1_1851 YP_003712095.1 Regulatory protein pqrA BAC0560 Protein 2e-21 47
XNC1_1851 YP_003712095.1 Regulatory protein pqrA NC_002695.1.917339.p Protein 2e-21 47
XNC1_1851 YP_003712095.1 Regulatory protein pqrA CP001138.1.gene1637. Protein 2e-21 47
XNC1_1851 YP_003712095.1 Regulatory protein pqrA CP000034.1.gene1596. Protein 2e-21 47
XNC1_1851 YP_003712095.1 Regulatory protein pqrA CP000034.1.gene4505. Protein 1e-21 45
XNC1_1851 YP_003712095.1 Regulatory protein pqrA BAC0371 Protein 5e-22 45
XNC1_1851 YP_003712095.1 Regulatory protein pqrA NC_002695.1.914293.p Protein 5e-22 45
XNC1_1851 YP_003712095.1 Regulatory protein pqrA CP001138.1.gene4488. Protein 2e-21 44
XNC1_1851 YP_003712095.1 Regulatory protein pqrA CP001918.1.gene327.p Protein 4e-22 43
XNC1_1851 YP_003712095.1 Regulatory protein pqrA CP000647.1.gene4499. Protein 5e-22 43
XNC1_1851 YP_003712095.1 Regulatory protein pqrA CP000647.1.gene1624. Protein 1e-21 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XNC1_1851 YP_003712095.1 Regulatory protein pqrA VFG1038 Protein 3e-20 48
XNC1_1851 YP_003712095.1 Regulatory protein pqrA VFG0585 Protein 2e-21 44