Gene Information

Name : XNC1_1821 (XNC1_1821)
Accession : YP_003712065.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Virulence
Product : Chelated iron transport system membrane protein yfeC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1748269 - 1749144 bp
Length : 876 bp
Strand : -
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 15908408, 9495751; Product type m : membrane component

DNA sequence : 
ATGATGGAGCTGCTGCTACAACCATTCAATTACAATTACATGGTAAAAGCCATCTGGGCAAGTACCATCGTCGGTGCGGT
CTGTGCTTTCTTATCTGCTTATCTCATGCTGAAAGGTTGGTCACTGATGGGAGACGCCCTCTCTCACTCTGTTGTACCCG
GTGTAGCAGGTGCATATGCTCTCGGTTTACCTTATGCCGGAGGGGCTTTTTTTACTGGGATGCTAGCGGCACTCTCAATG
ACATTGGTTCGCCATATCACTCGGTTACGTGAAGATGCGGTGATCGGGTTTATATTTTCCACCTTTTTTGCTGTTGGGTT
ATTGATCGTTTCTTTGAATCCCACATCTGTGAATGTACAAACCATTATTCTCGGCAATATATTGGGTATTTCTGATGAGG
ATCTTTTACAAGTCGAAATTATCATCGCAATTTCTTTTGTTATCTTAATGTTACTCTGGAAAGATTTATTAGTTGTTTTC
TTTGATGAAACTCATGCCCGATCCATCGGGATATCACCATTGCGGTTAAAAATCATTTTCTTCACTTTACTCAGTGCCTG
TACCGTTGCTGCATTACAAACTGTCGGCGCTATTCTGGTTATCGCAATGGTTGTCACTCCAGGTGCAACAGCCTATTTAT
TGACAGATAAATTTAAGCATCTCCTCATCATTGCTGTCGCGATTGGTTCACTGACCAGCGGCTTTGGTGCCTATCTGAGT
TATTTTCTGAATGGAGCAACCGGCGGTGTGATTGTCACAATACAAACTGTGATTTTCTTGCTCGCATTTTTCTTTGCACC
CAAACACGGCATGCTGGCCGCCCGCAAACGCGCCAGAAAAGAATCTCTGACATTGACTCAAGCGGGGCGTTCATGA

Protein sequence : 
MMELLLQPFNYNYMVKAIWASTIVGAVCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAGGAFFTGMLAALSM
TLVRHITRLREDAVIGFIFSTFFAVGLLIVSLNPTSVNVQTIILGNILGISDEDLLQVEIIIAISFVILMLLWKDLLVVF
FDETHARSIGISPLRLKIIFFTLLSACTVAALQTVGAILVIAMVVTPGATAYLLTDKFKHLLIIAVAIGSLTSGFGAYLS
YFLNGATGGVIVTIQTVIFLLAFFFAPKHGMLAARKRARKESLTLTQAGRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-78 67
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-78 67
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-78 67
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-78 67
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-78 67

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XNC1_1821 YP_003712065.1 Chelated iron transport system membrane protein yfeC BAC0441 Protein 1e-98 87
XNC1_1821 YP_003712065.1 Chelated iron transport system membrane protein yfeC BAC0351 Protein 1e-78 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XNC1_1821 YP_003712065.1 Chelated iron transport system membrane protein yfeC VFG0527 Protein 9e-79 67