Gene Information

Name : XNC1_1820 (XNC1_1820)
Accession : YP_003712064.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Virulence
Product : Chelated iron transport system membrane protein yfeD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1747376 - 1748272 bp
Length : 897 bp
Strand : -
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 15908408, 9495751; Product type m : membrane component

DNA sequence : 
ATGAATACGTTTATTGAATTCATTACTGAGCCTTTCATGCATGATTTCATGCGTCGAGCCATCTATGCTGCCATTATAGT
GGGTGCAGTCTGTGCTGTGCTTTCCTGTTACTTAGTCTTAAAGGGCTGGTCGTTGATGGGAGATGCCATTTCCCACGCTG
TTTTACCGGGTATAGTACTGGCCTTTGTTACAGGTATACCACTTGCAATAGGTGCCTTCCTTTCCGGTATATTTTGCGCT
TTCGCCACAGGATACTTGAAAGAAAATAGCAGAATCAAGGAAGATACTGTCATGGGAATTGTTTTCTCCGGCATGTTTGC
ATTTGGTTTAGTGTTGTTTACTCGGATAGATACAGATCAGCACCTGACACATATCTTATTCGGCAGCATACTTGGCATTA
CTCAGAATGAATTGCTGCAAACACTGTGCATTGCCGGGGTTACGCTAGCCACTGTATTACTGAAAAGAAAAGATTTTATG
CTCTATTGTTTCGACCCCAATCAGGCTCGCGTGGTCGGATTGCCTGTAAAAGTTATTCATTATGGTCTGTTGTCTCTGTT
GGCTCTGACAATTGTCGCGTCACTACAAGCAGTCGGTATCATTCTTGTTATCGCCATGCTGATCTCACCCGGTATTATCG
CTTTTATGCTCTGTCGAAGTTTTGATCGGATGCTTATTGTTGCAATAGTTGCGTCAGTATCTTCCAGCGTACTCGGTACC
ATCGTCAGCTTCCACATTGATGGTGAAACAGGACCGTGTATCGTCATCATTCAAGCCATTTTTTTTACAGTCGCACTTAT
TTATAACCAAATAAAATTAGCGCGTAAAAAAGTGCACAAGAGTTCATTCAAGAAAATTCCTGCTCACACACTGTCAATTC
CGGAAAAATCAAATTAA

Protein sequence : 
MNTFIEFITEPFMHDFMRRAIYAAIIVGAVCAVLSCYLVLKGWSLMGDAISHAVLPGIVLAFVTGIPLAIGAFLSGIFCA
FATGYLKENSRIKEDTVMGIVFSGMFAFGLVLFTRIDTDQHLTHILFGSILGITQNELLQTLCIAGVTLATVLLKRKDFM
LYCFDPNQARVVGLPVKVIHYGLLSLLALTIVASLQAVGIILVIAMLISPGIIAFMLCRSFDRMLIVAIVASVSSSVLGT
IVSFHIDGETGPCIVIIQAIFFTVALIYNQIKLARKKVHKSSFKKIPAHTLSIPEKSN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-65 54
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-65 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-65 53
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-64 53
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-65 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XNC1_1820 YP_003712064.1 Chelated iron transport system membrane protein yfeD BAC0442 Protein 6e-99 74
XNC1_1820 YP_003712064.1 Chelated iron transport system membrane protein yfeD BAC0352 Protein 3e-65 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XNC1_1820 YP_003712064.1 Chelated iron transport system membrane protein yfeD VFG0528 Protein 2e-65 54