Gene Information

Name : fliP (XNC1_1693)
Accession : YP_003711940.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1568560 - 1569378 bp
Length : 819 bp
Strand : +
Note : -

DNA sequence : 
ATGACAGGCAGCCAAATAACAGGAAAAAAACGGGTTTCACGACGTTATCGAATACGTTCAGGTGCAAAACGATTGAACTT
AGCACGTGTGATCACCCTGCTTATGGTGCTCTTTCTGCCGCTGTTCTCCATGAATGCAGCGGCTGAATTGCCCGGAATCA
TCAGCCAACCCCTGCCTAACGGCGGACAAAGCTGGTCATTGCCCGTTCAAACCCTGATTTTCATCACCGCATTGGGGTTC
ATCCCGGCTGCCCTGCTGATGATGACCAGCTTTACCCGTATCATTATCGTACTCGGCTTGTTGCGCAATGCACTGGGAAC
CCCTTCAGCCCCACCTAACCAAGTGATGTTGGGTTTGGCATTGTTCATGACATTTTTCATCATGGCGCCGGTATTTGACA
AAGTTTATCAGGATGCTTATCTGCCCTACAACGAAGATAAAATTACGCTGGAAGCCGCATTGGACAAGGGTTCAAAACCA
CTGCGCCAATTTATGTTGCGCCAGACCCGGGAAAATGATCTGGCGCTGTTTGCCCGCCTTGCAGATCAGGAAGCATTCGA
AACTGCGGATTCTGTACCATTGCGCGTACTTGTTCCGGCATTTATTACCAGCGAATTAAAAACCGCCTTTCAGATTGGGT
TTACCCTTTTCATTCCGTTTTTAATTATTGATCTGGTGGTTGCCAGTGTTTTAATGGCCTTGGGGATGATGATGGTGCCT
CCTGCTACCATATCGTTGCCGTTTAAACTGATGTTATTTGTCTTGGTGGATGGCTGGCAATTATTGCTTGGCTCGCTGGC
TCAGAGTTTTTATGTCTAA

Protein sequence : 
MTGSQITGKKRVSRRYRIRSGAKRLNLARVITLLMVLFLPLFSMNAAAELPGIISQPLPNGGQSWSLPVQTLIFITALGF
IPAALLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFMTFFIMAPVFDKVYQDAYLPYNEDKITLEAALDKGSKP
LRQFMLRQTRENDLALFARLADQEAFETADSVPLRVLVPAFITSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVP
PATISLPFKLMLFVLVDGWQLLLGSLAQSFYV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-29 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-34 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-35 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-35 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 8e-34 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 8e-35 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-35 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 8e-35 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 5e-22 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 5e-22 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-22 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-30 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-34 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-30 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-21 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-22 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_003711940.1 flagellar biosynthesis protein VFG2338 Protein 2e-92 85
fliP YP_003711940.1 flagellar biosynthesis protein VFG2494 Protein 5e-72 65
fliP YP_003711940.1 flagellar biosynthesis protein VFG2016 Protein 1e-62 60
fliP YP_003711940.1 flagellar biosynthesis protein VFG1259 Protein 1e-62 58
fliP YP_003711940.1 flagellar biosynthesis protein VFG0044 Protein 3e-33 44
fliP YP_003711940.1 flagellar biosynthesis protein VFG0188 Protein 2e-32 44
fliP YP_003711940.1 flagellar biosynthesis protein VFG0394 Protein 2e-31 43