Gene Information

Name : fliI (XNC1_1686)
Accession : YP_003711933.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 1562756 - 1564132 bp
Length : 1377 bp
Strand : +
Note : -

DNA sequence : 
ATGACGGCAAGACTCGGGCGCTGGCTGGCTGCATTGGATGTACTGGAAAAACGTCTGGAAAAACGTCTGGAAAAAACACC
TAAAGTGCGCCGCTATGGGCGCCTCACCCGTGCGACAGGCTTGATTCTGGAAGCCACTGGCTTACACATGCCCCTTGGCG
CAACCTGTCTGATTGAGCGCCAGAATGGTAAAATAATTGAAGAAGTTGAAAGTGAAGTTGTCGGCTTCAATGGCGAAAAA
CTCTTGTTAATGCCAATGGAAGAACTGGAAGGCATTGTGCCGGGTGCCCGCGTTTATGCCCGTTCTTATGGCGAAGAGGC
GGGCAGCGGGCGCCGCCTGCCCCTGGGGCCTGAATTACTCGGCAGAGTTCTGGATGGTGCGGGACGCCCCCTTGATGGTT
TGCCTGCCCCGGACACAAGTTATCGTGCCCCCCTGACAACAACCCCGTTTAACCCTCTGCAACGCACTCCAATCAGCGAT
GTGCTCGATGTTGGTGTTCGTGCTATCAATTCCTTGTTGACCGTTGGACGCGGGCAGCGCATGGGATTGTTTGCAGGCTC
GGGGGTGGGTAAAAGTGTATTGCTCGGCATGATGGCTCGCTATACCCAGGCTGATGTGATCGTCGTAGGACTGATTGGTG
AACGTGGCCGGGAAGTGAAAGACTTTATCGAAAATATTCTGGGTGTTGAAGGATTGTCGCGCTCAGTGGTTGTCGCAGCA
CCTGCTGATGTTTCACCATTGCTACGAATGCAAGGGGCCTCTTACGCGACCCGCATTGCCGAAGATTTTCGCGATCGCGG
TAAACATGTATTGTTAATTATGGATTCCCTGACTCGCTACAGCATGGCCCAACGCGAAATTGCACTGGCTATCGGCGAAC
CCCCCGCCACTAAAGGTTATCCCCCTTCCGTCTTTGCCAAATTACCCGCTCTGGTAGAAAGAGCCGGTAACGGCGTCAGT
GACGGCGGTTCAATTACGGCATTTTATACCGTACTAACAGAAGGTGATGACCAGCAAGACCCGATTGCCGATGCTGCCCG
GGCCATCCTGGATGGTCATATTGTGCTATCGCGCTCACTGGCAGAATCAGGCCACTATCCGGCCATTGATATTGCAGCCT
CCATCAGCCGTGCCATGACCGCATTAATCGACAATACCCATTATCGCCGGATACAGTTCTTTAAACAGTTACTTTCCAGT
TATCAGCGTAACCGGGATTTAATCAACGTCGGCGCTTATGCAGCAGGAAGTGATCCTTTATTGGATAAAGCCATTGAACT
TTACCCGTACATGGCTCAGTTTCTGCAACAAGGCATTGATGAGCGCAGTGAATATGACATGGCCTGTACCCAGCTTCAGC
AATTAATACCGACATAA

Protein sequence : 
MTARLGRWLAALDVLEKRLEKRLEKTPKVRRYGRLTRATGLILEATGLHMPLGATCLIERQNGKIIEEVESEVVGFNGEK
LLLMPMEELEGIVPGARVYARSYGEEAGSGRRLPLGPELLGRVLDGAGRPLDGLPAPDTSYRAPLTTTPFNPLQRTPISD
VLDVGVRAINSLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGVEGLSRSVVVAA
PADVSPLLRMQGASYATRIAEDFRDRGKHVLLIMDSLTRYSMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGVS
DGGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLSRSLAESGHYPAIDIAASISRAMTALIDNTHYRRIQFFKQLLSS
YQRNRDLINVGAYAAGSDPLLDKAIELYPYMAQFLQQGIDERSEYDMACTQLQQLIPT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 2e-58 49
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-62 49
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-62 49
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-62 49
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-62 49
escN AAC38383.1 EscN Virulence LEE Protein 2e-64 49
escN YP_003223475.1 translocator EscN Virulence LEE Protein 7e-64 49
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 4e-64 49
escN NP_290268.1 hypothetical protein Virulence LEE Protein 1e-64 49
escN AAC31513.1 L0034 Virulence LEE Protein 1e-64 49
ECs4568 NP_312595.1 EscN Virulence LEE Protein 1e-64 49
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 1e-64 49
escN AAK26715.1 EscN Virulence LEE Protein 5e-64 49
escN YP_003236088.1 translocator EscN Virulence LEE Protein 1e-64 49
escN AAL57542.1 EscN Virulence LEE Protein 5e-64 49
escN CAI43874.1 EscN protein Virulence LEE Protein 5e-64 49
escN CAC81862.1 EscN protein Virulence LEE II Protein 4e-64 49
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-62 48
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-64 48
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-64 48
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-62 48
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 3e-76 47
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 3e-76 47
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-76 47
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 2e-75 46
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-75 46
lscN AAO18044.1 LscN Virulence TTSS locus Protein 1e-67 46
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-75 45
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 9e-77 45
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-73 45
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-73 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 3e-60 45
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 6e-60 45
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 4e-59 43
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 3e-63 43
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 3e-60 43
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 2e-65 43
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 3e-58 42
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-58 42
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 2e-58 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_003711933.1 flagellum-specific ATP synthase VFG2331 Protein 5e-150 81
fliI YP_003711933.1 flagellum-specific ATP synthase VFG2499 Protein 3e-126 68
fliI YP_003711933.1 flagellum-specific ATP synthase VFG1254 Protein 2e-109 62
fliI YP_003711933.1 flagellum-specific ATP synthase VFG0515 Protein 1e-62 49
fliI YP_003711933.1 flagellum-specific ATP synthase VFG0730 Protein 1e-64 49
fliI YP_003711933.1 flagellum-specific ATP synthase VFG0812 Protein 5e-65 49
fliI YP_003711933.1 flagellum-specific ATP synthase VFG2144 Protein 7e-73 47
fliI YP_003711933.1 flagellum-specific ATP synthase VFG0192 Protein 9e-75 46
fliI YP_003711933.1 flagellum-specific ATP synthase VFG0048 Protein 2e-67 45
fliI YP_003711933.1 flagellum-specific ATP synthase VFG0390 Protein 2e-67 45