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Name : XNC1_0138 (XNC1_0138) Accession : YP_003710483.1 Strain : Xenorhabdus nematophila ATCC 19061 Genome accession: NC_014228 Putative virulence/resistance : Virulence Product : dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : 5.1.3.2 Position : 126055 - 127695 bp Length : 1641 bp Strand : + Note : - DNA sequence : ATGGGTATTTTAAAATGGGCTATTATTGGTTCATTTTTATCAACTTTAATTTTGATCGCATTTTCTTTATATCAGCAAGC TTTCTTACCAAGAACAGTCCCAATTATCTATTTTTCTTTTCTAGTTATTCTTCTGTGTGGTACTAGATTTTTTTACAGAA CACTCCGTAATTATACTATGAGTAGAGGAATCCCTGTCATTATATATGGTGCAGGGGAGTCAGGAAGACAGTTATTACCT ATATTAAGAGAACATCGCGAGTTTGAACCAGTAGCATTTATTGATGACAACTCAAAATTAAAAAATTTAAGTATTCATGG TGTTACTGTTTATTCGCCAAACTCAATTATTGATTTGATAGAAAAGTATAATGTAAAAAAAATACTACTTTCTATTCCTA GTGCATCTATCTCCGAAAGAAGATATATTATAGAAAAATTACAACCAACTCATTGCGAAATATTAACAATACCTAATTTT AATGAATTAGTAGATGGAAGCGCTCAAATTGACACACTAAGAAGAGTATCTGTCGATGATCTTTTAGGAAGGGAGCAAGT ATCTCCATTACCCGAGTTATTATCAAAAAATATTTTAAATAAAAATGTCCTTGTATCTGGAGCTGGAGGTTCAATTGGTT CAGAATTGTGCCGTCAAATTATTCAACAAAAACCGAATTCATTAGTTCTACTAGAACTAACAGAATATGCTCTTTATTCA ATAGAAAGAGAACTACAAAAAATCAACAGAGATAAAAAACTTAATGTTAATATCATACCCATATTAGGAGATATAAAGAA CTCGGAGAAAATTGATAAAATCCTGAGTAAATTTCATATTAATACCATTTATCATGCTGCAGCATACAAACATGTTCCTT TGGTTGAACTAAATACCATAGAAGGTATTCAAAATAATATTTTTGGTACTCTGGCGATTGCTCAAGCCGCTCTTAATCAA AAAGTTGATAAGTTCGTTTTAATATCGACAGACAAAGCAGTTCGCCCTACAAACATCATGGGAGCCACAAAAAGATTTGC CGAATTAATATTACAAGCATTAGCTAGACAAAATAAACACACCCAATTTTCTATGGTAAGATTCGGAAATGTTCTTGGTT CCTCGGGTTCAGTTGTACCTCTATTTGAGAAACAAATAGCCAATGGGGGGCCAATAACTCTTACTCATAAAGATATAACT CGATATTTCATGACAATTCCTGAAGCAGCTCAATTAGTCATTCAGGCTGGAGCTATGGGGGTTAATGGTGATGTTTTTGT GCTTGATATGGGAGAATCGGTAAGAATATATGATCTTGCTACCAAAATGATACATCTTTCAGGTTTAACAATTAAAAATG AAAATAACCTGCATGGTGATATAGAAATAAAAGTAACAGGTCTTCGTCCTGGAGAAAAATTATACGAAGAATTATTAATA GGAAATAATGTTTCAGGAACAAATCATCCTAGAATTATGACGGCAAATGAAATCTACCTAGAATGGTCTGAACTTAATAA ATTAATTCAAGAGCTTAAATCCGCTTGCTATGAACGTAATTTAGATACTATCCGCGAAATATTGATAAGTGCTCCTTTGG AATTTCATCCCAAAGATGATATATGTGATTTATTAAAATGA Protein sequence : MGILKWAIIGSFLSTLILIAFSLYQQAFLPRTVPIIYFSFLVILLCGTRFFYRTLRNYTMSRGIPVIIYGAGESGRQLLP ILREHREFEPVAFIDDNSKLKNLSIHGVTVYSPNSIIDLIEKYNVKKILLSIPSASISERRYIIEKLQPTHCEILTIPNF NELVDGSAQIDTLRRVSVDDLLGREQVSPLPELLSKNILNKNVLVSGAGGSIGSELCRQIIQQKPNSLVLLELTEYALYS IERELQKINRDKKLNVNIIPILGDIKNSEKIDKILSKFHINTIYHAAAYKHVPLVELNTIEGIQNNIFGTLAIAQAALNQ KVDKFVLISTDKAVRPTNIMGATKRFAELILQALARQNKHTQFSMVRFGNVLGSSGSVVPLFEKQIANGGPITLTHKDIT RYFMTIPEAAQLVIQAGAMGVNGDVFVLDMGESVRIYDLATKMIHLSGLTIKNENNLHGDIEIKVTGLRPGEKLYEELLI GNNVSGTNHPRIMTANEIYLEWSELNKLIQELKSACYERNLDTIREILISAPLEFHPKDDICDLLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 9e-82 | 45 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 1e-77 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| XNC1_0138 | YP_003710483.1 | dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase | VFG0029 | Protein | 6e-113 | 49 |
| XNC1_0138 | YP_003710483.1 | dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase | VFG1300 | Protein | 3e-80 | 45 |
