Gene Information

Name : ybbA (XNC1_0927)
Accession : YP_003711216.1
Strain : Xenorhabdus nematophila ATCC 19061
Genome accession: NC_014228
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 796221 - 796907 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGGCTGTAGAAAGTATTCTTGAAGTTCATCATCTCACTAAATATGTCGGTCAAGGGGAACAGGTAATTAATATATTGCA
AGGTGTTGAGCTGATTGTCGAGCCGGCACAAACAATTGCATTGATTGGTGAGTCGGGTTCAGGAAAATCCACGCTGCTTG
GAATTATTGCGGGATTGGATGATGGCAGCACTGGGGAAGTGCATTTGCTGGGCAAGAACCTCAGTCGCATGAATGAGGAG
CAGAGAGCACAGTTGAGGGCAGAAAACGTGGGTTTTGTTTTCCAGTCATTTATGTTGATCCCGACCTTAAACGCCTTGGA
GAACGTCCAGCTTCCGGCACTGTTGCGCGGTGAATCGGAAAATCAAAGCCGTCAGCAGGCTGTTGAATTACTCGAACAAT
TGGGATTGGGAAAACGCCTGAAACATATGCCGGCCCAGCTTTCAGGCGGGGAACAACAACGAGTGGCTCTGGCCCGTGCG
TTTTGTACCCGTCCCAAAATCCTGTTTGCAGACGAACCCACAGGTAATCTTGATCGCCAGACGGGAGATCGCATCGCTGA
TTTGCTGTTTTCCCTTAATCATGATTATGCCACTACGTTGATTTTAGTGACTCACGACAGCCAGCTTGCTGCCCGCTGTC
AGCGTCGTTTGCGTTTGGTGGATGGAAAATTGAGGGAAGAAGCATGA

Protein sequence : 
MAVESILEVHHLTKYVGQGEQVINILQGVELIVEPAQTIALIGESGSGKSTLLGIIAGLDDGSTGEVHLLGKNLSRMNEE
QRAQLRAENVGFVFQSFMLIPTLNALENVQLPALLRGESENQSRQQAVELLEQLGLGKRLKHMPAQLSGGEQQRVALARA
FCTRPKILFADEPTGNLDRQTGDRIADLLFSLNHDYATTLILVTHDSQLAARCQRRLRLVDGKLREEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-30 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybbA YP_003711216.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 3e-33 45
ybbA YP_003711216.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-36 45
ybbA YP_003711216.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 7e-36 43
ybbA YP_003711216.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-35 42
ybbA YP_003711216.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 2e-30 41