Gene Information

Name : sctR (wcw_0093)
Accession : YP_003708474.1
Strain : Waddlia chondrophila WSU 86-1044
Genome accession: NC_014225
Putative virulence/resistance : Virulence
Product : type III secretion inner membrane protein SctR
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 97481 - 98371 bp
Length : 891 bp
Strand : -
Note : Flagellar biosynthesis pathway, component FliP

DNA sequence : 
ATGAAGAAAAAACTGTTATTCAGCCTTAAACTTTTCGTCATTATTGGCATCCTTTGGATTTCTCCCAACCAACTGATCTT
ACAAAAAATTCATGCAGCCGAAAGCTATGAAAACTTGATCGCTCAATCACCTCCGCGGACAACGACATCGCCACAGCAAG
CTGCACCTCCTCAACAACAGTCGATCCAGGCAAATATTTTAGACAACTATGAAGATTTCAAAAAACCTTCGCTCATTACC
CAAGCGGCCGTTCTGACGATTTTGTCTATGCTTCCTTTTATTGTCATGATTCTCACATCTTTCATGAAGATTGTGATTGT
TCTTTCGCTTTTACGAAACGCGTTGGGCGTGCAGCAAGCTCCGCCAAACCAAATCATCAACGGCGTCGGTCTGATGTTAA
GCATGTTCATCATGTATCCAACCGTCGTGGAAATGTATGAAGTCTCGCAAAAAGCCACTCAGGAGATGCAAGCTCCAGAT
TCCGTTATTTCCTCTGGTTCTTCCACATATATTTTAACCATTGCCGATGCAACAAAAGAGCCTCTAAGAACGTTTCTCAT
TGATAATTCCAGTGTGCGCCACCGAGCCCTTTTCTTTCGCATGGCCTACAAAGTGCTGCCTGAAAAATACCGCCCGAACC
TAAAGCCGGAAGACTTTATTATCGTCGTTCCTTCGTTTATCACTAGCCAACTAAAAGATGCGTTTGAAATTGGTGTCCTG
ATCTACATTCCCTTTTTTGTCATCGATCTTGTCACCTCAAACATTTTGCTGGCAATGGGGATGATGATGCTTTCGCCTGT
CACCATCTCGATGCCGCTGAAGCTGTTCTTGCTCGTGATGCTTGATGGTTGGACATTGCTGGTTGAAGGTCTGGTAAATA
CCTTTAGGTAA

Protein sequence : 
MKKKLLFSLKLFVIIGILWISPNQLILQKIHAAESYENLIAQSPPRTTTSPQQAAPPQQQSIQANILDNYEDFKKPSLIT
QAAVLTILSMLPFIVMILTSFMKIVIVLSLLRNALGVQQAPPNQIINGVGLMLSMFIMYPTVVEMYEVSQKATQEMQAPD
SVISSGSSTYILTIADATKEPLRTFLIDNSSVRHRALFFRMAYKVLPEKYRPNLKPEDFIIVVPSFITSQLKDAFEIGVL
IYIPFFVIDLVTSNILLAMGMMMLSPVTISMPLKLFLLVMLDGWTLLVEGLVNTFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-40 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 9e-41 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 9e-41 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-34 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-34 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-34 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-34 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-34 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-36 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-40 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-40 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-31 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-40 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-40 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctR YP_003708474.1 type III secretion inner membrane protein SctR VFG2131 Protein 3e-60 53
sctR YP_003708474.1 type III secretion inner membrane protein SctR VFG0519 Protein 1e-34 42
sctR YP_003708474.1 type III secretion inner membrane protein SctR VFG2338 Protein 2e-31 41