Gene Information

Name : wcw_1887 (wcw_1887)
Accession : YP_003710231.1
Strain : Waddlia chondrophila WSU 86-1044
Genome accession: NC_014225
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 2030368 - 2031351 bp
Length : 984 bp
Strand : -
Note : Transposase and inactivated derivatives

DNA sequence :
ATGATCACTCAGGAGTATTTCATGGAAATTCAAATTTTAAGAAAACAAGGAAAGGGAATTCGACAGATAGCCAATGAACT
ATGTTTGTCGAGAAACACAGTAAGGAAATATTTAAGATCAAAGAAGCCGCCAAAATATCACTCAAACCAGAAGCGGCCAT
CGAAATTGGATCCATTTAAAGCGTTTCTTGAAAAACGGATAAAAAATGCCGGGCGCCATTTTATTCCGGCTACTGTTCTG
TATCGCGAGATCAAAGAACTCGGCTATCAAGGAGGGATTACAATTTTGCGAGACTGGGTAAGAAAAGGAAAAAAGCAAGT
AGAGTCCCAAAAAAGAGTTGTGCGATTTGAAACTCCTCCTGGGCATCAGGCTCAGGTGGACTGGACAGTGGTAAGCAAAG
GGTTATACGCTTTCGTCATGATCTTGGGATACAGCAGATGCGCATACGTTGAGTTTGTTCAATCCACGAACGAAGAGAGC
CTGATGAGATGTCATCAAAATGCATTTGAGTATTTTGGCGGTTTTTGTAAGGAGTTGTTGTACGACAACATGAAAACCGT
TGTCATTCAAAGGGATAAATATGGGCCATCTCAACATGGTTTTCAGAAGGCTTTTTGGGACTTTTCTAAACACTGGGGAT
TCATCCCCCGTCTATGCCGTCCATACAGAGCTAAAACCAAAGGAAAAGTCGAGAGATTCATCGGATATTTAAAACGCAGT
TTCTATTATCCTCTGGTGACAAAGGAAGATCACGACCTCTATTCTTTGAACTATGAAGTAAAGAAATGGCTGTCGGAAAT
TGCAAACAAGCGATGGATCAAAGAGTTGAAGTCAACTCCCCAACGAAGGTTTGTGGAAGAATCTAAGCATTTGCAGCCAT
TGGCTCCCGCTTATTTTTCCGATAAAAGATGTCAAATACGACAAATTGAAATTGTCCGACCACACCCTTTAGAGATCTAT
GAAATGACGGGGGATATGATATGA

Protein sequence :
MITQEYFMEIQILRKQGKGIRQIANELCLSRNTVRKYLRSKKPPKYHSNQKRPSKLDPFKAFLEKRIKNAGRHFIPATVL
YREIKELGYQGGITILRDWVRKGKKQVESQKRVVRFETPPGHQAQVDWTVVSKGLYAFVMILGYSRCAYVEFVQSTNEES
LMRCHQNAFEYFGGFCKELLYDNMKTVVIQRDKYGPSQHGFQKAFWDFSKHWGFIPRLCRPYRAKTKGKVERFIGYLKRS
FYYPLVTKEDHDLYSLNYEVKKWLSEIANKRWIKELKSTPQRRFVEESKHLQPLAPAYFSDKRCQIRQIEIVRPHPLEIY
EMTGDMI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 1e-61 47
api83 CAF28557.1 transposase Not tested YAPI Protein 1e-61 47
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 1e-61 47
y2411 NP_669718.1 transposase Not tested HPI Protein 1e-61 47
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 1e-61 47
unnamed CAA21403.1 - Not tested HPI Protein 1e-61 47
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 1e-61 44
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 9e-62 44
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 9e-62 44
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 9e-62 44
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 9e-62 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
wcw_1887 YP_003710231.1 transposase VFG1514 Protein 5e-62 44
wcw_1887 YP_003710231.1 transposase VFG1626 Protein 5e-62 44
wcw_1887 YP_003710231.1 transposase VFG1607 Protein 5e-62 44
wcw_1887 YP_003710231.1 transposase VFG1461 Protein 5e-62 44