Gene Information

Name : wcw_1672 (wcw_1672)
Accession : YP_003710022.1
Strain : Waddlia chondrophila WSU 86-1044
Genome accession: NC_014225
Putative virulence/resistance : Virulence
Product : ABC-type transporter, ATPase subunit
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : 3.6.3.-
Position : 1783439 - 1784212 bp
Length : 774 bp
Strand : -
Note : ABC-type spermidine/putrescine transport systems, ATPase components

DNA sequence : 
ATGAAGGATAAATCCGGCGCGCTTACTACGCATCAGCTGTCAGTCAACTATGGAGATGTCTCTGCTCTTTGGGATGTTTC
CTTGCAGGTTCCAGCTGGGGTTGTCGCCGGTATTATCGGGCCTAATGGCGCCGGAAAAACGACTCTGATTAAAACAGCTC
TTGGGTTGATACGTCCGATCAGTGGAAAAGTGGAATTTTTCAACCAGCCTTTGGAAAAAGCCAGAAAACGTATCGCGTAT
GTCCCGCAGAAAGAAACCGTCGATTGGGATTTTCCCATCACTGTTAGAGATCTGGTTCTCATGGGAAGATATGGGCATCT
TGGACTTTTTCGCTGGCCTAGACAGGCAGATTATGCTGCCGTGCACGAGTATTTGGAAATGGTTGGAATGGAACTGTTCG
CCCATCGCCAAATCAGCCAGTTGTCCGGCGGCCAACAGCAGAGAGTTTTTTTGGCGCGTGCGCTCATTCAGGAAGCAGAC
ATCTATTTGATGGATGAGCCTTTTGTTGGCATTGATTTGGGGACAAGGCAGGTGATCATGGACATTTTGCATAAACTTAG
GGATCAGGGAAAAACGGTTTGTGTCGTGCATCATGAGCTGGATAGCGTTGACAACTATTTCGATTGGGTCATTATGTTGA
ATATCCGCCTAGTTGCTTCGGGGCGCACAGAAGAGGTGTTTACTCGTGAAAATTTAAATGCTTGCTACGGGAAGAGCTAC
GCATTATTTGATGAGGCGTTGAAAATTTCAAAATCTAAACAGCAGGGTCTTTAG

Protein sequence : 
MKDKSGALTTHQLSVNYGDVSALWDVSLQVPAGVVAGIIGPNGAGKTTLIKTALGLIRPISGKVEFFNQPLEKARKRIAY
VPQKETVDWDFPITVRDLVLMGRYGHLGLFRWPRQADYAAVHEYLEMVGMELFAHRQISQLSGGQQQRVFLARALIQEAD
IYLMDEPFVGIDLGTRQVIMDILHKLRDQGKTVCVVHHELDSVDNYFDWVIMLNIRLVASGRTEEVFTRENLNACYGKSY
ALFDEALKISKSKQQGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 5e-48 47
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 6e-48 47
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-49 46
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-49 46
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-48 45
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-49 45
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-48 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
wcw_1672 YP_003710022.1 ABC-type transporter, ATPase subunit BAC0400 Protein 1e-58 52
wcw_1672 YP_003710022.1 ABC-type transporter, ATPase subunit BAC0350 Protein 1e-49 46
wcw_1672 YP_003710022.1 ABC-type transporter, ATPase subunit BAC0440 Protein 2e-47 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
wcw_1672 YP_003710022.1 ABC-type transporter, ATPase subunit VFG0526 Protein 9e-50 46