Gene Information

Name : ribD (wcw_1063)
Accession : YP_003709428.1
Strain : Waddlia chondrophila WSU 86-1044
Genome accession: NC_014225
Putative virulence/resistance : Unknown
Product : diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG1985
EC number : 1.1.1.193
Position : 1145420 - 1146439 bp
Length : 1020 bp
Strand : -
Note : Pyrimidine deaminase

DNA sequence : 
ATGGATGACCGTCGTTGGATGGAGATGGCAATTGCAGAAGGGCTGAAAGGAAGGCTTGACGCTCCTCCAAATCCTTGGGT
AGGTTGTATTCTTGTAAAAAATGGACAAATCGTTGGCCTCGGACACCATCCGGAATGCGGCTTGCCGCACGCGGAGGTTT
ACGCTCTGAGGGAGGCTGGACAAAATGCTCGAGGAGCGACAGCTTATGTGACGCTTGAACCGTGCGTGCATACAGGACGT
ACGCTTCCTTGCATTCATGCACTGATTGAGGCTGGTGTTGCGCGTGTCGTGGTTGGAGTGGAAGATCCAGATCCAAAAGT
GTCCGGTTCAGGAATTGCGGCTCTTAAAATTGCAGGAATAAAGGTTACTGTTGGAGTTGAACGGGAAGCAGTAGAGCTAA
GCTTGGCCCCTTATTTACACCATCGAAGAACTGGAAGACCGTTTGTGATTGCGAAAACAGCGCTTTCCATCGATGGACGA
GCAGCTGCAAGCGACAAAACCTCGCAATGGATCTCGTGCGAAGCAGCAAGACGCGATGCTCACGAGATGAGAGCCGAGTC
GCAGGCGATTCTGATAGGTGCTGGAACAGCAGTTAAAGATTCTCCTCAATTAACTGTGCGTCAAGTGAATAAGCTTCCAA
AGAAACAGCCGCTGCGGGTGCTTCTCGACCCCAATGGAAAAGTTCCGCATGACTCCCCTCTCTATGATCTTGATTTAGCT
CCGACTCTTGTTTTTTCAGAGAAAATGGAGCCGGAGAAAATTTTATCGATCCTGGGAGAAAAAGGAGTTATTCAACTCCT
GATCGAGGGAGGGCCGACGACAATCACTCAATTTTTGCAACAACATCTTATTGACCGTTTGATCGTCTACACCGGCCCTT
GCTTGCTTGGCTCTGATGGACTGCCGGGGTTTGGTTCAATGGGAATTTGCTCGATGGAAAACGCTTTAAGATTGCACCTT
TTGGAAAGTTCCGCTATTGGAAATAGCGTTAAGTCAGTATACGCTCATACGTTCCAATGA

Protein sequence : 
MDDRRWMEMAIAEGLKGRLDAPPNPWVGCILVKNGQIVGLGHHPECGLPHAEVYALREAGQNARGATAYVTLEPCVHTGR
TLPCIHALIEAGVARVVVGVEDPDPKVSGSGIAALKIAGIKVTVGVEREAVELSLAPYLHHRRTGRPFVIAKTALSIDGR
AAASDKTSQWISCEAARRDAHEMRAESQAILIGAGTAVKDSPQLTVRQVNKLPKKQPLRVLLDPNGKVPHDSPLYDLDLA
PTLVFSEKMEPEKILSILGEKGVIQLLIEGGPTTITQFLQQHLIDRLIVYTGPCLLGSDGLPGFGSMGICSMENALRLHL
LESSAIGNSVKSVYAHTFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 1e-47 41
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 1e-47 41