Gene Information

Name : Trad_0881 (Trad_0881)
Accession : YP_003704558.1
Strain : Truepera radiovictrix DSM 17093
Genome accession: NC_014221
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 947716 - 948387 bp
Length : 672 bp
Strand : +
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006:IPR016032; KEGG: dge:Dgeo_0130 two component transcriptional regulator; PFAM: response regulator rece

DNA sequence : 
ATGAGCGCGCGCGTCTTGGTCGTTGAAGATGAGTTCGTGGTGCGCGAACTCATCGCGTTTCACCTCACGCAAGCGGGCTT
TACCGTCGAGGAGGTCGGCACGCTCGAGGAGGCGTGGCGTTCGCTCACCGGCGTCGACGCGGTGGTGCTCGACTGGATGC
TCCCCGACGGTTCGGGGGTGGAGTGGCTGCGGCGGCTCCGGGCGACCGTGCGGGGGGAGCGGCTGCCGGTGTTGATGCTG
ACCGCCCGCGCGAGCGAGCGCGACAAGGTCTTCGGGCTCGACGCGGGGGCGGACGACTACCTCGCCAAACCGTTCTCGTC
AGCCGAGCTGACCGCCCGGCTGCGGGCGCTGCTGCGCCGCACCGAGCCGCAGCGGGTGCACAAGGTGGGCCCTTTGGAGC
TCGACGAGCGCCTCGGGGTGGTGACCTTAAACGGCCGCGAGCTCTCCTTGACCCGCCGCGAGTTCGAGCTGCTGGCCTTT
CTCTGCGCGAGCCCCGGGCGCGTCTTTTCGCGCACCGAGCTGCTCGACCGGGTGTGGGGGGAGGACTTTCTGGGCACCGA
GCGCACCGTCGACCAGCACATCGCGCAGCTCCGGGCGCTCGTCGGCGCGGAGCTCATCGAGACGGTGCGCGGGCGCGGCT
ACCGCCTCCGCGCGCCCGAAGGGTCCGCTTAG

Protein sequence : 
MSARVLVVEDEFVVRELIAFHLTQAGFTVEEVGTLEEAWRSLTGVDAVVLDWMLPDGSGVEWLRRLRATVRGERLPVLML
TARASERDKVFGLDAGADDYLAKPFSSAELTARLRALLRRTEPQRVHKVGPLELDERLGVVTLNGRELSLTRREFELLAF
LCASPGRVFSRTELLDRVWGEDFLGTERTVDQHIAQLRALVGAELIETVRGRGYRLRAPEGSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-17 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-16 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Trad_0881 YP_003704558.1 winged helix family two component transcriptional regulator VFG1390 Protein 4e-22 45
Trad_0881 YP_003704558.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-17 45
Trad_0881 YP_003704558.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-17 44